Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_NFIX_0002500

Sequence Length

259 nt

GC Content

0.5560

AAUCCGGACAAUCAGAUAGUUCAAACCAGCAAGGAGAUGCGGACAUCAAACCACUGCCCAACGGGCACUUAAGUUUCCAGGACUGUUUUGUGACUUCCGGGGUCUGGAAUGUGACGGAGCUGGUGAGAGUAUCACAGACUCCUGUUGCAACAGCAUCAGGGCCCAACUUCUCCCUGGCGGACCUGGAGAGUCCCAGCUACUACAACAUCAACCAGGUGACCCUGGGGCGGCGGUCCAUCACCUCCCCUCCUUCCACCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-76.1 kcal/mol

Ensemble Metrics

Free Energy: -80.95

Frequency: 0.0004

Diversity: 76.63

Structure Visualization

Structure Prediction

MFE Structure Prediction

(.((((((.........((((((((.((((..(((((((.((........)).)(((((...))))).....))))))..).))).)))).)))))))))).)((((..((.((.((((..(((((..(.(((.......((((.(((....))).))))(((.....(((((..((....)).)))))(((((((.((((.............))))...))))))))))))))..)))))....)))).))))))))

Thermodynamic Ensemble Prediction

(.((((((...,,(((((((((,,,,{,{{..{{.((({.,,.,,,,...},..(((((...))))).....}}}},,.))))))})),),},..)))))).)((((..((.((.((((,,(((((..,..}}}},,.,,((((.(((....))).))))({{.....,,{{({,((..{{||.||}||(({{|||,|,||......,,..}}}))})...))))))){{.|||,..,,))).}}.)))).))))))))