Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PTK2_0020200

Sequence Length

362 nt

GC Content

0.4006

AAACAGAUGAUUAUGCUGAGAUUAUAGAUGAAGAAGAUACUUACACCAUGCCCUCAAAAAGCUAUGGAAUAGAUGAAGCCAGGGAUUAUGAGAUUCAAAGAGAAAGAAUAGAACUUGGACGAUGUAUUGGAGAAGGCCAAUUUGGAGAUGUACAUCAAGGCAUUUAUAUGAGUCCAGAGAAUCCAGCUUUGGCGGUUGCAAUUAAAACAUGUAAAAACUGUACUUCGGACAGCGUGAGAGAGAAAUUUCUUCAAGAAGCCUUAACAAUGCGUCAGUUUGACCAUCCUCAUAUUGUGAAGCUGAUUGGAGUCAUCACAGAGAAUCCUGUCUGGAUAAUCAUGGAGCUGUGCACACUUGGAGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-66.7 kcal/mol

Ensemble Metrics

Free Energy: -75.61

Frequency: 0.0000

Diversity: 95.51

Structure Visualization

Structure Prediction

MFE Structure Prediction

......((((((((.(((((..(((.(.(((((......))).))).)))..)))).....((((...))))......(((((..((((....(((.....)))...))))..)))))..(((((((((...(((((...((((.((((((........))))))......((((.(((....(((.(((.((((((........))).))).))).)))..))).)))).....((((((....))))))))))..)))))..)))))))))(((((.((.((......)).)).)))))(((.(((.((........)).))).))).).))))))))....((.(.((....)).).))

Thermodynamic Ensemble Prediction

...,,.((((((((.(,{{{,.....,.{{{{{......}}}.,.((((({.........)},))))....{,,,...(((((..((((....(((.....))}...))))..))))).,(((((((((...(((((...{(((((((,((...,,...}|}|||.,,{{.((((.(((....(((.(((.((((((........))).))).})).)))..})).))))..},}||||||....},)))))))}..)))))..))))))))),||{{.{,.||,,,,..,,{||,|}|||,,,.|||,}|,}},|||,,,.,,},})),).)))))))),...((.(.({....}).).))