Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PTK2_0023700

Sequence Length

357 nt

GC Content

0.4566

CCUCUGACAGUGACGGCACCAUCCCUAACCAUUGCGGAGAAUAUGGCUGACCUAAUAGAUGGGUACUGCCGGCUGGUGAAUGGAACCUCGCAGUCAUUUAUCAUCAGACCUCAGAAAGAAGGUGAACGGGCUUUGCCAUCAAUACCAAAGUUGGCCAACAGCGAAAAGCAAGGCAUGCGGACACACGCCGUCUCUGUGUCAGAAACAGAUGAUUAUGCUGAGAUUAUAGAUGAAGAAGAUACUUACACCAUGCCCUCAACCAGGGAUUAUGAGAUUCAAAGAGAAAGAAUAGAACUUGGACGAUGUAUUGGAGAAGGCCAAUUUGGAGAUGUACAUCAAGGCAUUUAUAUGAGUCCA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-77.7 kcal/mol

Ensemble Metrics

Free Energy: -86.32

Frequency: 0.0000

Diversity: 106.11

Structure Visualization

Structure Prediction

MFE Structure Prediction

.(((((.(((((..((.......))....)))))))))).....(((.((((((.....))))).).)))((((((((...((....((....((((((((..((((((((........))))......(((((((.............((((.....)))).....)))))))..(((......))).((((((((.......))))).)))....))))....))))))))....))..))..))))).))).....(((((..((((....(((.....)))...))))..)))))..((((((((((......)))..........)))))))..((.((((....)))))).

Thermodynamic Ensemble Prediction

.(((((.(((((..((......,||....))))))))))....,(((.((((((.....))))).}.)))|{((((((({(({..,......})}})}}})))})}}(((({.....}.})))....{((({{{{||.,,....(({{{{((((((....{(.....)).,||{.,({|,.....,))}|||{{{((,|||,..,,,|||},,.,||||},|||,,,,..|,,,{......}||.|.((({({..((..(((((..((((....(((.....)))...))))..)))))..)).))},})).,..))))))))))).{{||,..}}}..)))),......}})))).