Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PTK2_0031900

Sequence Length

762 nt

GC Content

0.4108

AUAUGAAUUGAGAAUUCGUUAUUUGCCAAAAGGAUUUCUAAACCAGUUUACUGAAGAUAAGCCAACUUUGAAUUUCUUCUAUCAACAGGUGAAGAGCGAUUAUAUGUUAGAGAUAGCUGAUCAAGUGGACCAGGAAAUUGCUUUGAAGUUGGGUUGUCUAGAAAUACGGCGAUCAUACUGGGAGAUGCGGGGCAAUGCACUAGAAAAGAAGUCUAACUAUGAAGUAUUAGAAAAAGAUGUUGGUUUAAAGCGAUUUUUUCCUAAGAGUUUACUGGAUUCUGUCAAGGCCAAAACACUAAGAAAACUGAUCCAACAAACAUUUAGACAAUUUGCCAACCUUAAUAGAGAAGAAAGUAUUCUGAAAUUCUUUGAGAUCCUGUCUCCAGUCUACAGAUUUGAUAAGGAAUGCUUCAAGUGUGCUCUUGGUUCAAGCUGGAUUAUUUCAGUGGAACUGGCAAUCGGCCCAGAAGAAGGAAUCAGUUACCUAACGGACAAGGGCUGCAAUCCCACACAUCUUGCUGACUUCACUCAAGUGCAAACCAUUCAGUAUUCAAACAGUGAAGACAAGGACAGAAAAGGAAUGCUACAACUAAAAAUAGCAGGUGCACCCGAGCCUCUGACAGUGACGGCACCAUCCCUAACCAUUGCGGAGAAUAUGGCUGACCUAAUAGAUGGGUACUGCCGGCUGGUGAAUGGAACCUCGCAGUCAUUUAUCAUCAGACCUCAGAAAGAAGGUGAACGGGCUUUGCCAUCAAUACCAAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-167.8 kcal/mol

Ensemble Metrics

Free Energy: -185.26

Frequency: 0.0000

Diversity: 267.89

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((((((...)))))).)))((.((....))((((((....(((....))).((((((.(((((((((((..(((((.(((....))))))))((((((...............(((.((.....)).)))..))))))))))))))))).))))))))))))...((..((((..(.((((...(((((((.((((((.((...((((((...(((........)))...((((((((((.....(((((((((((((((((.((((..((((((...((..((........))..)).....))))))..)))).))))).....((((((..(((....)))....(((((((((.......(((((((..(((....)))))).))))........)))))))))((((......))))((((..((((((....)))))).))))))))))((......)).))))))))).....(((........))))))......))).)))))))...))))))..)).))))))........(((((((......((..........))......)))))))....(((....)))....))).))))...)))).)..))))..))....((((........).)))......(((.((((((.....))))).).)))(((((((((((((..........))))...))))))).))..........((((....(((...))).....)))).))

Thermodynamic Ensemble Prediction

,,(((((((...})))))}.,|(((((....|,{(((({....(((....}}}.((((((.(((((((((((,{(((({.,((..,.,,|||}}|((,{((....,,,...,,}.})),.)),.,},},..}}}}))}},,})))))))))).))))))}}}}},.,||||,{{,,,|{|{{{{,|.((((({|.{(((((.((...((((((..{((.,,,{||,,|,|,,,((({(((({{.....||||,|||||||(((((.(({{,,((((((,,.((..((.,......}}..},.....}}}}}}..)}}}.))))).....,{{{{...(({...,|||,{,.,{({{{|||....||||||||{{,,((({,...||||..}})),},}}},}))))))))))||},,,}}})))|((((..((((((....)))))).)))))|||||..||||,.,..,,,|||,}||||..{||...,,...)))))),.,,,,)}}.}}}|||}.,{|}}}}}.,|}.}||||}..,,..,,,{{,{((,.....}))}..,.............,..|(({{..........)))}},,})),)}}}.}.||||,.{{|||,.{|}....,{||....},}}),)))}.....(((.((((((.....))))).).)))(((((((({{(({,.,......}}},}},,))))))).))|},,...}}.||||...,|||,,,))).....,.,}.,}