Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PTK2_0033400

Sequence Length

445 nt

GC Content

0.4382

GCCAAAACACUAAGAAAACUGAUCCAACAAACAUUUAGACAAUUUGCCAACCUUAAUAGAGAAGAAAGUAUUCUGAAAUUCUUUGAGAUCCUGUCUCCAGUCUACAGAUUUGAUAAGGAAUGCUUCAAGUGUGCUCUUGGUUCAAGCUGGAUUAUUUCAGUGGAACUGGCAAUCGGCCCAGAAGAAGGAAUCAGUUACCUAACGGACAAGGGCUGCAAUCCCACACAUCUUGCUGACUUCACUCAAGUGCAAACCAUUCAGUAUUCAAACAGUGAAGACAAGGACAGAAAAGGAAUGCUACAACUAAAAAUAGCAGGUGCACCCGAGCCUCUGACAGUGACGGCACCAUCCCUAACCAUUGCGGAGAAUAUGGCUGACCUAAUAGAUGGGUACUGCCGGCUGGUGAAUGGAACCUCGCAGUCAUUUAUCAUCAGACCUCAGAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-90.5 kcal/mol

Ensemble Metrics

Free Energy: -100.45

Frequency: 0.0000

Diversity: 148.41

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.......(((((.....((......))....))))).......))(.........((((((...((....))....))))))(((.(((..((.((((((..((.((((((..((.....)))))))).)).....(((((..((((((....)))))).)))))((((....(((((.....(((..(((((((((....))....(((.((((.(((......((((..((.(((((((..(((((..........))))).....))))))).)))))).......))).(((((..........)))))..)))))))....(((((.(((((..((.......))....))))))))))....))))))))))......)))))..)))))))))).))..)))..)))...(((...........)))........)

Thermodynamic Ensemble Prediction

((,......{{,{{..,{{(({{{{..,.....,}}}|....,|{||(...(({....}|},,,.,{{{,{|||{,,,{{{({({{({,.((({,.,,||{||,|}}|,||{{|,,}|}}||,}}||||..}},.}}}|((((..((((((....)))))).)))))|||},,,.|{,.,,,.,..||,.|||||}.{{,...,}....|||,{(({.|{{......{(({,|{|.(((((((..{((((..........))))}.....))))))).},,)}}.}}....}},.{((((..........))))}||}}}}})}..}}(((((.(((((..{{......,||....)))))))))).....(((.{(((({.....))))).}.)))((((((((({(({,.,......}}},)},,))))))).)),,,,...)