Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PTK2_0033500

Sequence Length

500 nt

GC Content

0.4260

AAAAGAUGUUGGUUUAAAGCGAUUUUUUCCUAAGAGUUUACUGGAUUCUGUCAAGGCCAAAACACUAAGAAAACUGAUCCAACAAACAUUUAGACAAUUUGCCAACCUUAAUAGAGAAGAAAGUAUUCUGAAAUUCUUUGAGAUCCUGUCUCCAGUCUACAGAUUUGAUAAGGAAUGCUUCAAGUGUGCUCUUGGUUCAAGCUGGAUUAUUUCAGUGGAACUGGCAAUCGGCCCAGAAGAAGGAAUCAGUUACCUAACGGACAAGGGCUGCAAUCCCACACAUCUUGCUGACUUCACUCAAGUGCAAACCAUUCAGUAUUCAAACAGUGAAGACAAGGACAGAAAAGGAAUGCUACAACUAAAAAUAGCAGGUGCACCCGAGCCUCUGACAGUGACGGCACCAUCCCUAACCAUUGCGGAGAAUAUGGCUGACCUAAUAGAUGGGUACUGCCGGCUGGUGAAUGGAACCUCGCAGUCAUUUAUCAUCAGACCUCAGAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-105.6 kcal/mol

Ensemble Metrics

Free Energy: -115.99

Frequency: 0.0000

Diversity: 162.69

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((((((.......))).)))))))((((((.((((..((((((...((..((........))..)).....))))))..)))).)))))...................((((((...((....))....))))))(((.(((..((.((((((..((.((((((..((.....)))))))).)).....(((((..((((((....)))))).)))))((((....(((((.....(((..(((((((((....))....(((.((((.(((......((((..((.(((((((..(((((..........))))).....))))))).)))))).......))).(((((..........)))))..)))))))....(((((.(((((..((.......))....))))))))))....))))))))))......)))))..)))))))))).))..)))..)))...(((...........)))........)

Thermodynamic Ensemble Prediction

({((((((((.,.....|||||}||}}|((((((.((((..((((((,,.((..((........}}..}}.....))))))..)))).))))).....{{{{{,..(({...,}}},,,.,{({{({((,,.,{{{(((({((,.((({...,||||,,}})}.}|,,},,))))}}}})||||.,,}},)))|((((..((((((....)))))).)))))|||},.,,{{|,{,,.,,||||,||{{||.{{,...,}...,|||,||{{.|||......|||{,{{|.(((((((..{((((..........))))}.....))))))).},,)}}.,,....}},.(((((..........))))}||}))}}}}..,.(((((.(((((..{{......,}}....)))))))))).....|||,|{{|{{.....))))).},)))((((((((({(((,,,......}}},)},,))))))).)).,,,...)