Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_PTK2_0040300

Sequence Length

286 nt

GC Content

0.3636

AUAUGAAUUGAGAAUUCGUUAUUUGCCAAAAGGAUUUCUAAACCAGUUUACUGAAGAUAAGCCAACUUUGAAUUUCUUCUAUCAACAGGUGAAGAGCGAUUAUAUGUUAGAGAUAGCUGAUCAAGUGGACCAGGAAAUUGCUUUGAAGUUGGGUUGUCUAGAAAUACGGCGAUCAUACUGGGAGAUGCGGGGCAAUGCACUAGAAAAGAAGUCUAACUAUGAAGUAUUAGAAAAAGAUGUUGGUUUAAAGCGAUUUUUUCCUAAGAGUUUACUGGAUUCUGUCAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-52.3 kcal/mol

Ensemble Metrics

Free Energy: -59.86

Frequency: 0.0000

Diversity: 118.78

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((((((((((.((.((.........)).)).))))..(((.(((....(((((.((..((....))..)))))))....))).)))......))))).)))))(...(((((..((((.((((((((((((((((((((((((((..(((((((((....)).)))))))..))).......(((......)))(((((........(((((((....)))..))))........)))))))))))))))...)))))..).))))))).)))))))))..)

Thermodynamic Ensemble Prediction

,,,,{{{(({{{{{{(({{...{((((....{,((((({...(((((,..,|{,((((((.((((((({{{{,{{{({|.,{{.,,.}}|||}}|{{|{{{.,.,,|{...|||,|}},,||,,|||||,,|||||||||||||}))))))).}))))}.......,}},,,,}..)))}}}}}}},|..}}}},,},||({{,.......||||,{{.,,,|,|.{||||{{{{{,{{{|,...,,.))))})))))),))},,,})))}}),)))))},}),}.