Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_RBFOX2_0008600

Sequence Length

225 nt

GC Content

0.5422

GGUAACCAGGAGCCGACAACAACUCCUGACGCAAUGGUUCAGCCUUUUACUACCAUCCCAUUUCCACCACCUCCGCAGAAUGGAAUUCCCACAGAGUAUGGGGUGCCACACACUCAAGACUAUGCCGGCCAGACCGGUGAGCAUAACCUGACACUCUACGGAAGUACGCAAGCCCACGGGGAGCAGAGCAGCAACUCACCCAGCACACAAAAUGGAUCUCUUACG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-42.5 kcal/mol

Ensemble Metrics

Free Energy: -47.12

Frequency: 0.0006

Diversity: 59.16

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((...((((((..........)))))).....(((((.............))))).((((((..............))))))..((((...(((((.(.((((................(((((..(((.....)))..))))))))).).)))))..))))........)))(..(((((...(((......)))..(((..........))).)))))...)

Thermodynamic Ensemble Prediction

(((...((((((..........)))))).....(((((...,.........))))).{{{{{{........{{{{.,||.|||...,{{,..,{{({.{|({{{,.....,,}}|.,{..(((((..(((.....)))..)))))..)).,.}}))).,))),},......}||(..{{{|{|,.({{......))).,|({..........))).,}}},...)