Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SHPRH_0004200

Sequence Length

260 nt

GC Content

0.4308

GAGAACCUUUCAGCAUUUAAACGUGAUCCCCAAAUCAAUAUUUUGCUGCUGCCCCUGCACACAGGUUCUAAUGGAUUAACUAUCAUUGAAGCAACUCAUGUUCUCUUGGUGGAGCCCAUAUUGAACCCUGCCCAUGAGCUUCAGGCCAUAGGGAGGGUGCACCGAAUUGGACAGACAAAACCUACUAUUGUACACAGAUUCUUAAUUAAAGCAACAAUAGAAGAAAGAAUGCAGGCAAUGCUGAAAACUGCUGAGAGAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-52.3 kcal/mol

Ensemble Metrics

Free Energy: -58.85

Frequency: 0.0000

Diversity: 74.58

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((....((((((((((......((((......)))).......((....)).((((((....(.(((.(((((........)))))))).)...((.(((((..((((((.(............((((.((((((.(((...)))))).)))))))).))))))...)))))))......((.(((((((......................))))))).))......)))))).)))))))))).)).((......))

Thermodynamic Ensemble Prediction

......(((((((((,,......{({{......}}}|...,.,,(({,{,{{,((((,,..}}||{{{.{((((.,...,,||||}}|||{|{,....|))}|,,,|}}}))},.,}}}..||.(((((.(({(((.(((...)))))).))}))))).}}||,...|}}.,,..,,....((.(((((((.....,{,.....,,,......))))))).))......,}||}}...,))}},,,..)))))))))..,