Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SHPRH_0010200

Sequence Length

425 nt

GC Content

0.4376

GCCAAACAGCUGCGAGAGCACUACAUGAGCAAGUGUAAUACAGAAGUUGCUGAAGCCCAGCAAGCUUUAUAUCCUGUGCAGCAGACCAUCCAUGAGCUUCAAAGAAAGAUUCAUUCUAAUUCUCCUUGGUGGCUAAAUGUGAUCCACAGAGCAAUAGAAUUUACUAUUGAUGAGGAGCUAGUUCAGCGAGUGCGAAAUGAAAUAACCAGCAACUACAAGCAACAAACUGGCAAGCUUUCUAUGUCAGAGAAGUUCCGUGAUUGCAGAGGUCUUCAGUUCUUACUUACAACACAAAUGGAAGAGCUAAAUAAAUGCCAGAAGCUAGUAAGAGAGGCUGUAAAAAACCUGGAGGGACCUCCAUCUCGUAAUGUUAUUGAGUCUGCAACAGUCUGUCACCUCCGACCAGCCAGACUUCCUCUCAACUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-92.6 kcal/mol

Ensemble Metrics

Free Energy: -102.17

Frequency: 0.0000

Diversity: 152.31

Structure Visualization

Structure Prediction

MFE Structure Prediction

((..((((..((((((((((((...(((((.(((........((((((((((.....)))).)))))).....((((...))))....(((((.(((((((((((((((.....)))..))))..)))).))))..))).))(((.((...((((((......)))))).)).)))))).)))))...))))).............((((..((((.(((......((((((((((((((((((.....((((.....(((((.((....)).)))))...)))).....)))..))).)))))).......))))))..))).))...))..)))).........(((((....)))))))))))).))))....((.(((...))).))(((......)))..))(((............)))

Thermodynamic Ensemble Prediction

((....,,{,(((({{,(((((.,.(,,{,.|||}}......((((((((((.....)))))}})))).....||{||,,}}||.,{,{{{{{{((((((..{(({{{,....,}}}..,}||{.,|||{}||,...,)},},||}||,,,((((((......)))))).}}.}}}|}|.}}}}},,.}}|}}.............{{||..|{,{.,||......(((((((({{{{{{,|||,},.|||||,,.,||{,,|,,,.})})},}|{|||{,,|},.........,}))))))))).......})))))..))|{||..{{|{{|,,|,........(((((....))))},}}||},.,,,,...|((,(((...,,|,|,{||....}.)}}..},}}})),,}}}}}}.})))