Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SHPRH_0014500

Sequence Length

333 nt

GC Content

0.3483

GUUCAGAUACCUCUUCUGCUCAUUAUAUCAUUCUAAGUGAUAGUCUAAAGGAAGAAGUGGCUCACAGAGAUAAGAAGAGGUGUUCAAAAGUGGUGAGCUUCUCAAAACCAAUUGAAAAAGAAGAGACUGUUGGUAUUUUUUCCCCUUUGUCUGUAAAGUUAAAUAUUGUGAUUUCUCCCUAUCAUUUUGAUAAUUCCUGGAAAGCAUUUCUAGGAGAAUUAACUCUUCAGCUUCUUCCUGCACAGAGUUUAAUUGAAAAUUUUUCCGAAAGGAGUAUUACAUUGAUGAGUUCAGAGUCAAGCAAUCAGUUCCUGAUUUAUGUUCAUUCAAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-64.4 kcal/mol

Ensemble Metrics

Free Energy: -72.57

Frequency: 0.0000

Diversity: 118.17

Structure Visualization

Structure Prediction

MFE Structure Prediction

((......))((.(((((((((((((((((....(((((((((......(((.(((((.((..(((((.(.(((..((((.(((((.......))))).))))...((((((................))))))..........)))).))))).............)).))))))))))))))))))))))..(((((((((...))))))))).((((((((((...((........))..)))).))))))........((((....))))........)))))))..)))))...(((((((((...)))))...))))........))

Thermodynamic Ensemble Prediction

((...,,,||((,(((({((({{{,((((({,...|||||}|,,,....{{{{{{{(({{{,,{{,||},..||||||||,|||{,....,.,|||}},,}||{,.{{{{,|,},......,.,,,|.,,,||,.......,,.,|||})}},}..,,,,,.....,{{({{..||||.|||||},,})))}.,(((((((({...})))))))),{{{{((((((.,.({......,,)}..))))}}}}}}}..,,...,|{{{....)))}.}}},,,.})))))},.}}|||,..{{{((((((...)))))}..}}}}.,.,,...})