Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SLC8A1_0005400

Sequence Length

437 nt

GC Content

0.4485

GAAGAUCAUUACCAUUAGAAUAUUUGACCGUGAGGAAUAUGAGAAAGAGUGCAGUUUCUCCCUUGUGCUUGAGGAACCAAAAUGGAUAAGAAGAGGAAUGAAAGGUGGCUUCACAAUAACAGGAAAAUACCUGUUUGGCCAACCUGUCUUCAGGAAGGUUCAUGCUAGAGAACAUCCGAUUCUCUCUACUGUAAUCACCAUUGCAGACGAAUAUGAUGACAAGCAGCCACUGACCAGCAAAGAGGAAGAGGAGAGGCGCAUUGCAGAAAUGGGGCGCCCCAUCCUGGGAGAGCACACCAAGUUGGAAGUGAUCAUUGAAGAAUCCUAUGAAUUCAAGAGUACUGUGGACAAACUCAUUAAGAAGACAAACCUGGCCCUUGUGGUUGGGACUAACAGCUGGAGAGAACAGUUCAUUGAAGCUAUCACUGUCAGUGCUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-98.3 kcal/mol

Ensemble Metrics

Free Energy: -109.65

Frequency: 0.0000

Diversity: 95.34

Structure Visualization

Structure Prediction

MFE Structure Prediction

..((.((...(((((.((.(((((...((....)))))))((((((........))))))(((((....)))))..(((...)))...................(((....)))...((((((......)))))).(((((...(((((((.(((..((((........)))).))).......((..(((((((....)))))))..))...((((((.......((((...(((((..........(((((.(((((....((....))..))))).).))))((.........))..))))).((((.((.(((((............))))))).))))))))......)))))).)))))))....))))))).)))))...))))..((((..((.((...((((......))))....)).))...))))

Thermodynamic Ensemble Prediction

...{.((((({........,((((({.((..,,|},....((((((........)))))){((({....}))))..{{{...}))...{{.{((((({,((.((((((({.......((((((......)))))),))))},))).}),}}.(((..((((........)))).))).,}))})))).(((((((....))))))).,}}}}})))))),...((({{(((((({((,....,,....(((({.(((((..,.((....)).,))))).}.)))){(,........))..{{{,|.((({.((.(((((...,........))))))).}))).|.}}}...|||.....,........(((((((.....)))))))......{{|||..,.,..}}})},.,,,..}}}.,,.))))))))))))