Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0001800

Sequence Length

262 nt

GC Content

0.5725

CUAGAACAACAGAGGCAGCAGUUGCUUACUGAACGCCAAAACUUCCACAUGGAACAGCUGAAGUAUGCUGAAUUACGAGCACGACAGCAAAUGGAACAGCAGCAGCAUGGCCAGAACCCUCAACAGGCACACCAGCACUCAGGAGGACCUGGCCUGGCCCCACUUGGAGCAGCAGGGCACCCUGGCAUGAUGCCUCAUCAACAGCCCCCUCCCUACCCUCUGAUGCACCACCAGAUGCCACCACCUCAUCCACCCCAGCCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-61.7 kcal/mol

Ensemble Metrics

Free Energy: -65.81

Frequency: 0.0013

Diversity: 48.89

Structure Visualization

Structure Prediction

MFE Structure Prediction

((........)).(((....((((((..(((....(((....((((....))))..((((..((..(((........)))))..))))...)))..))).))))))..((((((...((((...((((......)).))...))))..))))))((((......(((.(((.(((((......(((.(((((...)))))...)))...........))))).))).)))......)))).................)))..

Thermodynamic Ensemble Prediction

{{.........{,(({....((((((..(((....(({....((((....))))..((((..(,.,(((........)))))..))))...}))..))).))))))..((((((...((((...((((......)).))...))))..))))))((((......(((.(((.,((((......(((.(((((...)))))...)))..........,}}})).})).}))...}..)))}...,,,,..........)}}..