Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0001900

Sequence Length

397 nt

GC Content

0.5239

CACCUGGCUGCAGUGGAAGAAAGAAAGAUCAAGUCCCUGGUAGCUCUCUUGGUUGAGACACAAAUGAAGAAACUAGAGAUCAAACUUCGACAUUUUGAAGAGCUGGAAACUAUCAUGGACAGAGAGAAAGAAGCUCUAGAACAACAGAGGCAGCAGUUGCUUACUGAACGCCAAAACUUCCACAUGGAACAGCUGAAGUAUGCUGAAUUACGAGCACGACAGCAAAUGGAACAGCAGCAGCAUGGCCAGAACCCUCAACAGGCACACCAGCACUCAGGAGGACCUGGCCUGGCCCCACUUGGAGCAGCAGGGCACCCUGGCAUGAUGCCUCAUCAACAGCCCCCUCCCUACCCUCUGAUGCACCACCAGAUGCCACCACCUCAUCCACCCCAGCCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-106.6 kcal/mol

Ensemble Metrics

Free Energy: -113.03

Frequency: 0.0000

Diversity: 65.69

Structure Visualization

Structure Prediction

MFE Structure Prediction

...(((((((..(((((.((............((((.((((((.(((((.((((....((....))....))))))))).....((((((....)))))).........)))))).))))..((((.......)))).......((((((.....((((((..(((....(((....((((....))))..((((..((..(((........)))))..))))...)))..))).))))))..((((((...((((...((((......)).))...))))..))))))..((.((....)).))...((((......(((.(((((...)))))...)))....))))..))))))..(((.(....).))).......)).)))))..)))))))

Thermodynamic Ensemble Prediction

...(((((((..(((((.((........,,..((((.((((((.(((({{((((....{,....}}....))))))))).,...((((((....))))))...,,....)))))).))))..((((.......)))).......((((((.....((((((,.{{{....(({....((((....))))..((((..(,.,(((........)))))..))))...}}}..}}},}}}}))..((((((...((((...((((......)).))...))))..)))))),|||.,,....|}.}}|,|((((......(((.(((((...)))))...)))....,,},..)))))).,||,,|....}.})),......)).)))))..)))))))