Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0002000

Sequence Length

723 nt

GC Content

0.4772

AAGGAGCUGAAGAGGAAAAAAUGGAAGCCGACCCUGAUGGUCAGCAGCCUGAAAAGGCAGAAAAUAAAGUGGAAAAUGAAACGGAUGAAGGUGAUAAAGCACAAGAUGGAGAAAAUGAAAAAAAUAGUGAAAAGGAACAGGAUAGUGAAGUGAGUGAGGAUACCAAAUCAGAAGAAAAGGAGACUGAAGAGAACAAAGAACUCACUGAUACAUGUAAAGAAAGAGAAAGUGAUACUGGGAAGAAGAAAGUAGAACAUGAAAUUUCCGAAGGAAAUGUUGCCACAGCCGCAGCAGCUGCUCUUGCCUCAGCGGCUACCAAAGCCAAGCACCUGGCUGCAGUGGAAGAAAGAAAGAUCAAGUCCCUGGUAGCUCUCUUGGUUGAGACACAAAUGAAGAAACUAGAGAUCAAACUUCGACAUUUUGAAGAGCUGGAAACUAUCAUGGACAGAGAGAAAGAAGCUCUAGAACAACAGAGGCAGCAGUUGCUUACUGAACGCCAAAACUUCCACAUGGAACAGCUGAAGUAUGCUGAAUUACGAGCACGACAGCAAAUGGAACAGCAGCAGCAUGGCCAGAACCCUCAACAGGCACACCAGCACUCAGGAGGACCUGGCCUGGCCCCACUUGGAGCAGCAGGGCACCCUGGCAUGAUGCCUCAUCAACAGCCCCCUCCCUACCCUCUGAUGCACCACCAGAUGCCACCACCUCAUCCACCCCAGCCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-173.5 kcal/mol

Ensemble Metrics

Free Energy: -185.42

Frequency: 0.0000

Diversity: 137.09

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....((((.................((.((((.....)))).)).((((....))))........................((((((.((((.....((.((((.(((.................((........))......(((.(((((((............((((............))))............)))))))..))).................((..((((...........))))..)).....((((((...))))))(((((.....(((.((((((((((...(((((..(..((((...(((((......)))))...))))..).............((((.((((((.(((((.((((....((....))....))))))))).....((((((....)))))).........)))))).))))..((((.......)))).........)))))))))))))))................((((....))))..((((..((..(((........)))))..))))...)))....))))).((..((((((...((((...((((......)).))...))))..))))))..)).)))))))..))...((((......(((.(((((...)))))...)))....))))....((((.((...)).))))......))))))))))....))))...

Thermodynamic Ensemble Prediction

...,.((((....{{...........((.((((.....)))).)).((((....))))...........,............((((({,((((.....((,{,{{.(((.................{{........}}...,,.(((.(((((((............((((............))))............)))))))..))).},,.............((..((((...........))))..)).....{(((((...)))))}(((((.....,.}}|||{((((((,.,(((((.,{,{(({(...(((({......)))))...||||{.{.........,}..((((.((((((.(((({{((((....,,....}}....))))))))}.,...((((({....))))))...,.....)))))).)))).,(({{.......)))).........))))))}}}}}))))..}||....,,.....|(((....))),..((((..({.{(((........)))))..))))...}}}....))))}.((..((((((...((((...((((......)).))...))))..))))))..)).}},,}})},))}}}((((......(((.(((((...)))))...))),.,,}}}}...,|||{.||,..}}.)}},})}...)))))))))).,},)))),..