Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0006100

Sequence Length

270 nt

GC Content

0.4037

GCAGAAAAUAAAGUGGAAAAUGAAACGGAUGAAGGUGAUAAAGCACAAGAUGGAGAAAAUGAAAAAAAUAGUGAAAAGGAACAGGAUAGUGAAGUGAGUGAGGAUACCAAAUCAGAAGAAAAGGAGACUGAAGAGAACAAAGAACUCACUGAUACAUGUAAAGAAAGAGAAAGUGAUACUGGGAAGAAGAAAGUAGAACAUGAAAUUUCCGAAGGAAAUGUUGCCACAGCCGCAGCAGCUGCUCUUGCCUCAGCGGCUACCAAAGCCAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-36.5 kcal/mol

Ensemble Metrics

Free Energy: -40.59

Frequency: 0.0013

Diversity: 40.93

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((........((((..................(((......)))........................((........))......(((.(((((((............((((............))))............)))))))..))).................((..((((...........))))..)).....((((((...))))))....))))(((.((....)).))).))))((....((((.....)))).))

Thermodynamic Ensemble Prediction

((((........((({.........{........(((......)})........................{{........}}...,,.(((.(((((((............((((............))))............)))))))..))).},,.............((..((((...........))))..)).....{(((((...))))))||||)},},,|.||||,.,)}))),})))((....((((.....)))).))