Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0006300

Sequence Length

488 nt

GC Content

0.4652

AGGAGUUUUCUCGGGUCCGGGAGGAGGUACCACUGGAAUUGGUUGAAGCUCAUGUCAAGAAAGUACAAGAAGCAGCACGAGCCUCUGGGAAAGUGGAUCCCACCUACGGUCUGGAGAGCAGCUGCAUUGCAGGCACAGGGCCCGAUGAGCCAGAGAAGCUUGAAGGAGCUGAAGAGGAAAAAAUGGAAGCCGACCCUGAUGGUCAGCAGCCUGAAAAGGCAGAAAAUAAAGUGGAAAAUGAAACGGAUGAAGGUGAUAAAGCACAAGAUGGAGAAAAUGAAAAAAAUAGUGAAAAGGAACAGGAUAGUGAAGUGAGUGAGGAUACCAAAUCAGAAGAAAAGGAGACUGAAGAGAACAAAGAACUCACUGAUACAUGUAAAGAAAGAGAAAGUGAUACUGGGAAGAAGAAAGUAGAACAUGAAAUUUCCGAAGGAAAUGUUGCCACAGCCGCAGCAGCUGCUCUUGCCUCAGCGGCUACCAAAGCCAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-112.7 kcal/mol

Ensemble Metrics

Free Energy: -120.21

Frequency: 0.0000

Diversity: 77.4

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((..((((((((....))))))))....)).((((..(((((((..((((.((((......).))).).)))..))..((((.(((((.....(((((........))))).((((((((((((..(((.(((....((((((.....((.....(((((....))))).....))......)))..((.((((.....)))).)).((((....))))..........(((.........((........)).......)))........................((........))......(((.(((((((............((((............))))............)))))))..))).................((..((((...........))))..)).....((((((...))))))...)))...))))))))))))))))))..))))).)))))))))..)).))

Thermodynamic Ensemble Prediction

,((..{(((((((,..,||}}}}}}|,,.)).((((..((((({(..((((.((((......).))).),,))..)}..{{|{.{((({...||{{,,|}},},...}}}}},((((((((((((..(((.(((....((((({.,...((.....(((((....))))).....))......)))..((.((((.....)))).)).((((....))))..........(((,.........{........{{{......)))........................{{........}}...,,.(((.(((((((............((((............))))............)))))))..))).},,.............((..((((...........))))..)).....((((((...)))))).,,})),}.)))))))))))))))))).}))}}}.)))|}))}}.,)),.)