Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0010600

Sequence Length

421 nt

GC Content

0.5226

GCCCUGGAGAUGUACAAGGAUGAUUGGAACAAAGUGUCGGAACAUGUUGGAAGUCGUACUCAGGAUGAAUGCAUCCUCCACUUUUUGAGACUUCCCAUUGAGGACCCAUACCUUGAGAAUUCAGAUGCUUCCCUUGGGCCUUUGGCCUACCAGCCUGUCCCCUUCAGUCAGUCAGGAAAUCCAGUUAUGAGUACUGUUGCUUUUUUGGCAUCUGUGGUGGACCCUCGCGUGGCAUCUGCUGCAGCAAAAGCGGCUUUGGAGGAGUUUUCUCGGGUCCGGGAGGAGGUACCACUGGAAUUGGUUGAAGCUCAUGUCAAGAAAGUACAAGAAGCAGCACGAGCCUCUGGGAAAGUGGAUCCCACCUACGGUCUGGAGAGCAGCUGCAUUGCAGGCACAGGGCCCGAUGAGCCAGAGAAGCUUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-126.4 kcal/mol

Ensemble Metrics

Free Energy: -133.3

Frequency: 0.0000

Diversity: 156.2

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((....((((..((.((((((....(((.((((....)))).)))..)))))).)).((((((....))))))..((((((((((.(((((((((((((.......))))))...(((((.((((((((((((((((..(((......))).((((((..(((...(((((((((..((((.......))))....)))))))))..))).)).))))((((.((.(((...((((........))))))).)))))).........))))))))).)))))))...)))))..)))..))))))))......)))))).......(((((....(((((((((...((((.......))))..))))))).)).)))))..))))....))))))(....((((.......)))))

Thermodynamic Ensemble Prediction

((((((....{({,,.,{.((({((.,,.({,.{({{,.,,}))).}}|,,||||}}.,,.((((((....)))))),,{{{{{{{|{|||||||{,{{({((.......)}))}}...{{{{(.(((({({{{(((((({..|||},,...|||.((((,(..(((...(((((((({.,((((.......))))..|.|))))))))..))).}).)))}{{{{.{{,{({..,{((({{.......))))),.,,||||{,..,})}}))))))))).))})})),,.)}))}..}||,,|,,||||,||||,,}}}})}},,.,..||{{|....||||||{||}.,||||...,...},,,.,||||}||.||.}}})).,)}))}}}.))))))(....((((.......)))))