Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0012200

Sequence Length

259 nt

GC Content

0.5019

GCCCUGGAGAUGUACAAGGAUGAUUGGAACAAAGUGUCGGAACAUGUUGGAAGUCGUACUCAGGAUGAAUGCAUCCUCCACUUUUUGAGACUUCCCAUUGAGGACCCAUACCUUGAGAAUUCAGAUGCUUCCCUUGGGCCUUUGGCCUACCAGCCUGUCCCCUUCAGUCAGUCAGGAAAUCCAGUUAUGAGUACUGUUGCUUUUUUGGCAUCUGUGGUGGACCCUCGCGUGGCAUCUGCUGCAGCAAAAGCGGCUUUGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-67.4 kcal/mol

Ensemble Metrics

Free Energy: -72.32

Frequency: 0.0003

Diversity: 67.7

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((.((.((.(((((((((((...((..(..((((............(((((((.((...((((((....))))))........)).)))))))))))..)..))))).)))))..........))).))))..))))((..((((.....((..((((((..(((...(((((((((..((((.......))))....)))))))))..))).)).))))....))(((((....))))).((....))))))..))

Thermodynamic Ensemble Prediction

((((.((.((.(({{,{({(({.{{,{..{{,.((({,,{,.|,|,,,(((((((.,,...((((((....))))))........,}.))))))),}|,,,|,.}}.}},)}))),...,}}...))).))})..))))((..((((.....{{..(((({(..(((...(((((((((.,((((.......))))..}.)))))))))..))).)).))))....||(({((....||}}}.||....))))))..))