Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0017300

Sequence Length

268 nt

GC Content

0.4664

AUACUUGGCAUAUCGAAAUUUUAUGAUUGACACGUAUCGUCUAAACCCCCAAGAGUAUUUAACUAGCACUGCUUGUCGGAGGAACUUGACUGGAGAUGUGUGUGCUGUGAUGAGGGUCCAUGCCUUUUUAGAGCAGUGGGGACUCGUUAAUUACCAAGUUGACCCGGAAAGUAGACCCAUGGCAAUGGGACCUCCUCCUACUCCUCAUUUUAAUGUAUUAGCUGAUACCCCCUCUGGGCUUGUGCCUCUGCAUCUUCGAUCACCUCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-60 kcal/mol

Ensemble Metrics

Free Energy: -66.22

Frequency: 0.0000

Diversity: 53.49

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((.((.((.((((........)))))).)).))))(...........(((((((.((.....)).))).))))...((((....(((.(((((((((....(((.(((.((((.......)))).))).)))((.((((..((((((((.((.(((.(((...(((..((((.(((((....)))))........)))))))))).)))...)))))))).))..))))))..((((....))))..))))))))).))))))).)

Thermodynamic Ensemble Prediction

((((.((.({.((({........))))}}.)).))))(,,.....,,.,({{((((.,,.....}}.}}).))))..,((((....(((.(((((((((,..,(((.(((.((((,,....,)))),))).)))|{.((((..((((((({,{{.{{{.(((...(({.,((((.(((((....)))))......,.)))))))))).}))...)})))))).))..))))}...((((....)))).,))))))))).))))))).)