Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0018100

Sequence Length

308 nt

GC Content

0.4058

GAAGAUGAAGAUCCUGCCAAAGGUGAUCAGAGUCGAUCAGUUGACCUUGGGGAAGAUAAUGUGACAGAGCAGACCAAUCACAUUAUUAUUCCUAGUUAUGCAUCAUGGUUUGAUUAUAACUGUAUUCAUGUGAUUGAACGGCGUGCUCUUCCUGAGUUCUUCAAUGGAAAAAACAAAUCCAAGACUCCAGAAAUAUACUUGGCAUAUCGAAAUUUUAUGAUUGACACGUAUCGUCUAAACCCCCAAGAGUAUUUAACUAGCACUGCUUGUCGGAGGAACUUGACUGGAGAUGUGUGUGCUGUGAUGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-65 kcal/mol

Ensemble Metrics

Free Energy: -72.83

Frequency: 0.0000

Diversity: 108.73

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((....((((((......)).))))((.(((((....)))))))((((((.((((((((((..(.......)..)))))))))).)))))).....(((.(.(.(((((((((((..((....))))))))))))).).)))))))))((((((.((....((((.........))))))))))...((((((.(((((((((.........))))...(((.......))).......))))).))))))...((((((.((..(((..((........))...)))..)))))))).....))

Thermodynamic Ensemble Prediction

({,{{,...,{||{{,{{..,|}{{{{{...,,,}}}}}.}},||(((((((,,(((,(((((,.{(((({..{({{(((((|,|,|{|..,|(((((((.((((.....))))))))))))}}...))))))))}...})..))))))||{{((({{((,...{(((.........))))}))))}.,},,..,,.|||||{{,{,,.......}|}},,,|.}}}}},,.))},....}}))))).)},,,,.,{{(((((,((.{{((.,{(........)).,,})})}),)))))),...,))