Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0018300

Sequence Length

346 nt

GC Content

0.4133

AUGAGCAGGAUGAAGAAACAGUCACAGCAGGAGGAAAGGAAGAUGAAGAUCCUGCCAAAGGUGAUCAGAGUCGAUCAGUUGACCUUGGGGAAGAUAAUGUGACAGAGCAGACCAAUCACAUUAUUAUUCCUAGUUAUGCAUCAUGGUUUGAUUAUAACUGUAUUCAUGUGAUUGAACGGCGUGCUCUUCCUGAGUUCUUCAAUGGAAAAAACAAAUCCAAGACUCCAGAAAUAUACUUGGCAUAUCGAAAUUUUAUGAUUGACACGUAUCGUCUAAACCCCCAAGAGUAUUUAACUAGCACUGCUUGUCGGAGGAACUUGACUGGAGAUGUGUGUGCUGUGAUGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-77.6 kcal/mol

Ensemble Metrics

Free Energy: -85.66

Frequency: 0.0000

Diversity: 125.16

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....((...))........(((((((((.(((((((((((((....((((((......)).))))((.(((((....)))))))((((((.((((((((((..(.......)..)))))))))).)))))).....(((.(.(.(((((((((((..((....))))))))))))).).)))))))))))...))))))..((((.........)))).....((((........))))((((.........))))....((((((.(((((....(((((((((((.((.....)).))).))))..)).)).....)))..)).)))))).)))))))))...

Thermodynamic Ensemble Prediction

.....({...}}........(((((((({{(((({.(((({{{....,{||||,||..,|}|||||.,.{{{||}},.})}}}||((((((.((((((((((..(.,....,}..)))))))))).))))}|{{{{{(,((({,.,,,||||||||}}||....,}))))))))}}}.}.})))))))}}},,,}}||}}..((((.........)))),,,,,|{||.......,||||{{,{.,,......}}}),,.,{{|{||,{{|||....,{||||||{||,,,...,..{,|||,|}}|{,|}.}}...,,))).}}}}})))}},)))))))))...