Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0018400

Sequence Length

406 nt

GC Content

0.4089

UGAACCUAAAGAAAGAUAGUGAAAAUACACCUGUUAAAGGAGGAACUGUAGCGGAUCUAGAUGAGCAGGAUGAAGAAACAGUCACAGCAGGAGGAAAGGAAGAUGAAGAUCCUGCCAAAGGUGAUCAGAGUCGAUCAGUUGACCUUGGGGAAGAUAAUGUGACAGAGCAGACCAAUCACAUUAUUAUUCCUAGUUAUGCAUCAUGGUUUGAUUAUAACUGUAUUCAUGUGAUUGAACGGCGUGCUCUUCCUGAGUUCUUCAAUGGAAAAAACAAAUCCAAGACUCCAGAAAUAUACUUGGCAUAUCGAAAUUUUAUGAUUGACACGUAUCGUCUAAACCCCCAAGAGUAUUUAACUAGCACUGCUUGUCGGAGGAACUUGACUGGAGAUGUGUGUGCUGUGAUGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-86.6 kcal/mol

Ensemble Metrics

Free Energy: -96.55

Frequency: 0.0000

Diversity: 151.02

Structure Visualization

Structure Prediction

MFE Structure Prediction

(....(((........)))........((((((((......(((.(((...))).))).....)))))).)).....)(.(((((((((.(((((((((((((....((((((......)).))))((.(((((....)))))))((((((.((((((((((..(.......)..)))))))))).)))))).....(((.(.(.(((((((((((..((....))))))))))))).).)))))))))))...))))))..((((.........)))).....((((........))))((((.........))))....((((((.(((((....(((((((((((.((.....)).))).))))..)).)).....)))..)).)))))).)))))))))..)

Thermodynamic Ensemble Prediction

(....{{.........,,{{{......|||(((((,.{{..,,,.||,,}}))).|||.....}}}})).}......,{.((((((((({(((({.{({{{{,....,,||||,||..,|}{||||...,,,||}},.})}}}||((((((.((((((((((..(.,....,|..)))))))))}.))))}|{{{{{(,((({..,,,||||||||}}||....,}))))))))}}}.}.}))))))))}},,,}}||}}..((((.........)))),,,,}|{||....,..,||||{{,{,,,......}}}),,,,{|||||,|{|||....,||||}}|,||,,,...,..{,|||,|}}|{,||.},...,,))).}}}},)))}},)))))))))..}