Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0026000

Sequence Length

449 nt

GC Content

0.4276

CUAUGAUACUUGGGUCCAUAGUAAUGAUGUUGAUGCUGAAAUUGAAGAUCCACCAAUUCCAGAAAAACCAUGGAAGGUUCAUGUGAAAUGGAUUUUGGACACUGAUAUUUUCAAUGAAUGGAUGAAUGAGGAGGAUUAUGAGGUGGAUGAAAAUAGGAAGCCUGUGAGUUUUCGUCAGCGGAUUUCAACCAAGAAUGAAGAGCCAGUCAGAAGUCCAGAAAGAAGAGAUAGAAAAGCAUCAGCUAAUGCUCGAAAGAGGAAACAUUCGCCUUCGCCUCCCCCUCCGACACCAACAGAAUCACGGAAGAAGAGUGGGAAGAAAGGCCAAGCUAGCCUUUAUGGGAAGCGCAGAAGUCAGAAAGAGGAAGAUGAGCAAGAAGAUCUAACCAAGGAUAUGGAAGACCCAACACCUGUACCCAAUAUAGAAGAAGUAGUACUUCCCAAAAAUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-94.8 kcal/mol

Ensemble Metrics

Free Energy: -103.02

Frequency: 0.0000

Diversity: 73.66

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((((......)).)))))((.....(((((((((...............(((.(((((....((((......))))..)).))).))).((((((((.(((((.((((((.....(((.(((((((.(((((((...((((...............))))...))))))).)))......)))).)))....))))))....)))))..))))))))..............)))))))))...(.(((....))).).........((((.((((..(.((((...............)))).)..))).).))))((((((.......)))))).(((((((.((..............((.((((..........))))..)).(((...(((.....)))...))).....................)).)))))))....))

Thermodynamic Ensemble Prediction

((((({{......}),}))))((.....(((((((((...........,,,,{{,.(((((.....,,{.}}}},)))|{,|,.,,,,))),|(((((((.(((({.((((((.,...(((.(((((((.(((((((...((((...{...........))))...))))))).)))......)))).)))....))))))....)))))..)))))))}..............)))))))))...,.(((....))).|....,,,..((((.((((..{.((((...............)))).}..))).).))))((((((.......)))))).(((((((.((.....{{.......{{.((((..........))))..}}.,{{...(((.....)))...}||{{{.....,,},}........)).)))))))....))