Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0026100

Sequence Length

519 nt

GC Content

0.4316

AAGAAUGGUUGAGACCGGUGAUGAGAAAAGAGAAGCAAGUGUUAGUGCAUUGGGGCUUUUACCCAGACAGCUAUGAUACUUGGGUCCAUAGUAAUGAUGUUGAUGCUGAAAUUGAAGAUCCACCAAUUCCAGAAAAACCAUGGAAGGUUCAUGUGAAAUGGAUUUUGGACACUGAUAUUUUCAAUGAAUGGAUGAAUGAGGAGGAUUAUGAGGUGGAUGAAAAUAGGAAGCCUGUGAGUUUUCGUCAGCGGAUUUCAACCAAGAAUGAAGAGCCAGUCAGAAGUCCAGAAAGAAGAGAUAGAAAAGCAUCAGCUAAUGCUCGAAAGAGGAAACAUUCGCCUUCGCCUCCCCCUCCGACACCAACAGAAUCACGGAAGAAGAGUGGGAAGAAAGGCCAAGCUAGCCUUUAUGGGAAGCGCAGAAGUCAGAAAGAGGAAGAUGAGCAAGAAGAUCUAACCAAGGAUAUGGAAGACCCAACACCUGUACCCAAUAUAGAAGAAGUAGUACUUCCCAAAAAUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-117.2 kcal/mol

Ensemble Metrics

Free Energy: -125.3

Frequency: 0.0000

Diversity: 122.45

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....((((((((((((.(((((((((........(((((((((..((.(((((.......)))))...))..))))))))).((((((....((((((((.((.(....(((((((((.((((((.((((.......((((((...)))))).....))))..))))....))..)))))))))....).)).))).......)))))...))))))....(((((...)))))...))))))))).))).))))))))).(((((..((.....))....((((........).))).....(((....)))..(.(((....))).)..)))))..((((.((((..(.((((...............)))).)..))).).))))((((((.......)))))).(((((((.((..............((.((((..........))))..)).(((...(((.....)))...))).....................)).)))))))......

Thermodynamic Ensemble Prediction

.....((((((((((((.(((((((((........(((((((((..((.(((((.......)))))...))..))))))))).{{{(((.,,.{(,,{{((.((.(....{((({{{(({(((({,.((((.....,,({{{{{..,}}|}}},...,)))},,}))),...|}..,}}))))})....).)).})),......)))))..,))))))....(((((...)))))...))))))))).))).))))))))).,,,((,.,..,.,.|}....{{{{........}.}}}.....{((.,..}}}..|,||(....}}).,..,,})},,((((.((((,,{,((({...,,..........}))}.}..))).),)))){(((((.......)))))).(((((((.((.....{{.......({.((((..........))))..}}.,{{...(((.....)))...}||{{{.....,,,,,........)).)))))))......