Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0026200

Sequence Length

589 nt

GC Content

0.4312

GGAACAUUUACGGAUGAGAAGUCAAAAGCUUCCCACCACAUUUACCCAUAUUCUUCCUCACAAGACGAUGAAGAAUGGUUGAGACCGGUGAUGAGAAAAGAGAAGCAAGUGUUAGUGCAUUGGGGCUUUUACCCAGACAGCUAUGAUACUUGGGUCCAUAGUAAUGAUGUUGAUGCUGAAAUUGAAGAUCCACCAAUUCCAGAAAAACCAUGGAAGGUUCAUGUGAAAUGGAUUUUGGACACUGAUAUUUUCAAUGAAUGGAUGAAUGAGGAGGAUUAUGAGGUGGAUGAAAAUAGGAAGCCUGUGAGUUUUCGUCAGCGGAUUUCAACCAAGAAUGAAGAGCCAGUCAGAAGUCCAGAAAGAAGAGAUAGAAAAGCAUCAGCUAAUGCUCGAAAGAGGAAACAUUCGCCUUCGCCUCCCCCUCCGACACCAACAGAAUCACGGAAGAAGAGUGGGAAGAAAGGCCAAGCUAGCCUUUAUGGGAAGCGCAGAAGUCAGAAAGAGGAAGAUGAGCAAGAAGAUCUAACCAAGGAUAUGGAAGACCCAACACCUGUACCCAAUAUAGAAGAAGUAGUACUUCCCAAAAAUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-141.9 kcal/mol

Ensemble Metrics

Free Energy: -152.72

Frequency: 0.0000

Diversity: 133.79

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((...((((.((((((((.(((...((((((.....((((((((((((.((((((((....(((.((.....)).)))..((((...................(((((((((..((.(((((.......)))))...))..)))))))))))))(((....)))..(((.((.(....(((((((((.((((((.((((.......((((((...)))))).....))))..))))....))..)))))))))....).)).))))))))))).)))).))))))))......))))))...))).))))))))...(((((((.......................)))))))..................(((....)))..(.(((....))).).((.(((((((((.((((((.(((.....((...........)).....))).))))..((((((.......))))))..)))))).)).)))))........((.((((..........))))..)).(((...(((.....)))...)))..................))))...))))((....))

Thermodynamic Ensemble Prediction

((((...((((.((((((((.(((...((((((.....((((((((((((.(((((((({,..{{(.((.....}}.))}..|,,{,.,................(((((((((..((.(((((.......)))))...))..))))))))).{||({{.,,..,,,,,{{.{{,|,...{(({{{{{({{{{{{,,((((.....,,{,||||.,}}}}}}}.,...))))}})))),},.}}..,})})))})..,})}})...))))))))).)))).))))))))......))))))...))).))))))))...(((((((.........{{.........},.)))))))..................{((.,..}}}..|||{(....}}}.,....}}}|{((((.(((({{,{(({{...,,..........})),.,..))).)}))}){(((((.......)))))}.,||{.,||,{,....{{.......,|.,{{|,.,,......}}}}..}|.,{{...(((.....)))...}|||{,,,,..,,,,,.....))))...))))({....))