Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0028200

Sequence Length

394 nt

GC Content

0.4315

AAGAAUGGUUGAGACCGGUGAUGAGAAAAGAGAAGCAAGUGUUAGUGCAUUGGGGCUUUUACCCAGACAGCUAUGAUACUUGGGUCCAUAGUAAUGAUGUUGAUGCUGAAAUUGAAGAUCCACCAAUUCCAGAAAAACCAUGGAAGGUUCAUGUGAAAUGGAUUUUGGACACUGAUAUUUUCAAUGAAUGGAUGAAUGAGGAGGAUUAUGAGGUGGAUGAAAAUAGGAAGCCUGUGAGUUUUCGUCAGCGGAUUUCAACCAAGAAUGAAGAGCCAGUCAGAAGUCCAGAAAGAAGAGAUAGAAAAGCAUCAGCUAAUGCUCGAAAGAGGAAACAUUCGCCUUCGCCUCCCCCUCCGACACCAACAGAAUCACGGAAGAAGAGUGGGAAGAAAGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-91.7 kcal/mol

Ensemble Metrics

Free Energy: -98.25

Frequency: 0.0000

Diversity: 107.76

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....((((((((((((.(((((((((........(((((((((..((.(((((.......)))))...))..))))))))).((((((....((((((((.((.(....(((((((((.((((((.((((.......((((((...)))))).....))))..))))....))..)))))))))....).)).))).......)))))...))))))....(((((...)))))...))))))))).))).))))))))).(((((..((.....))....((((........).))).....(((....)))..(.(((....))).)..)))))..((((.((((..(.((((...............)))).)..))).).)))).....

Thermodynamic Ensemble Prediction

..,,,((((((((((((.(((((((({........(((((((((..((.(((((.......)))))...))..))))))))).{||(((.,,.{{,,{(((.((.(,...{{({{{{(({(((({,.((((.....,,({{{||.,,}}||}}....,)))},}}))),...||,.,}}||}}}}....}.}}.}}),,..,..})))}..,))))))....(((((...)))))...))))))))).))).))))))))).,,.{{..,...,,.}}....{{{{........,.}}}.....{((.,..))}..{.(((....))).,..}}))).{((({.{{(({{,{((,,...{{..........,)),....))).)})),).,,})