Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0028400

Sequence Length

557 nt

GC Content

0.4219

AACAAUUGUUUGACCAGACCCAACAUCUACCUCAUUCCAGACAUUGAUCUGAAGUUGGCUAACAAAUUGAAAGAUAUCAUCAAACGACAUCAGGGAACAUUUACGGAUGAGAAGUCAAAAGCUUCCCACCACAUUUACCCAUAUUCUUCCUCACAAGACGAUGAAGAAUGGUUGAGACCGGUGAUGAGAAAAGAGAAGCAAGUGUUAGUGCAUUGGGGCUUUUACCCAGACAGCUAUGAUACUUGGGUCCAUAGUAAUGAUGUUGAUGCUGAAAUUGAAGAUCCACCAAUUCCAGAAAAACCAUGGAAGGUUCAUGUGAAAUGGAUUUUGGACACUGAUAUUUUCAAUGAAUGGAUGAAUGAGGAGGAUUAUGAGGUGGAUGAAAAUAGGAAGCCUGUGAGUUUUCGUCAGCGGAUUUCAACCAAGAAUGAAGAGCCAGUCAGAAGUCCAGAAAGAAGAGAUAGAAAAGCAUCAGCUAAUGCUCGAAAGAGGAAACAUUCGCCUUCGCCUCCCCCUCCGACACCAACAGAAUCACGGAAGAAGAGUGGGAAGAAAGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-127.8 kcal/mol

Ensemble Metrics

Free Energy: -139.55

Frequency: 0.0000

Diversity: 133.17

Structure Visualization

Structure Prediction

MFE Structure Prediction

..(((....))).((..........((((.(((.(((..........(((((..((((((............(((.((.......)).))).(((((.((((.(.((((((((.(((...((((((.....((((((((((((.((((((((....(((.((.....)).)))..((((...................(((((((((..((.(((((.......)))))...))..)))))))))))))(((....)))..(((.((.(....(((((((((.((((((.((((.......((((((...)))))).....))))..))))....))..)))))))))....).)).))))))))))).)))).))))))))......))))))...))).)))))))).).)))))))..))..........)))))))))))..........)))))).))))..(((....)))..(.(((....))).).........((((.((((..(.((((...............)))).)..))).).))))...))

Thermodynamic Ensemble Prediction

,,{...,|||{,........,,...((((.(((.(((..{{{.....(((((..((((((......,{{...{{{.{{.......}}.}}}.,{{,..{{{{.{.((((((((.(((...((((((.....((((((((((((.(((((((({,..{{(.((.....}}.))}..|,,{,.,................(((((((((..((.(((((.......)))))...))..))))))))).{||({{.,,..,,,,,{{.{{,|,...{(({{{{{({{{{{{,,((((.....,,{,||||.,}}}}}}}.,...))))}})))),,,.}}..,))})))})..,})}})...))))))))).)))).))))))))......))))))...))).)))))))).,.}}}}|||..}}.....}}...)))))}))))).})}..,,,.}},))).)))}..(((,,..}},.,}}||(,,..}}},|..,.}}}.,((({.{(((..{.((((...............)))).}..))).),))})...})