Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0033100

Sequence Length

521 nt

GC Content

0.4434

UAUGUUCAUGCGGAUGCUCCUACCAAUAAAACACUGGCUGGGCUGGUGGUGCAGCUUCUUCAGUUCCAGGAAGAUGCCUUUGGGAAGCAUGUCACCAACCCGGCCUUCACCAAACUCCCUGCAAAGUGUUUCAUGGAUUUCAAAGCUGGAGGCGCCUUAUGUCACAUUCUUGGGGCUGCUUACAAGUAUAAAAAUGAACAGGGAUGGCGGAGGUUUGACCUACAGAACCCAUCUCGAAUGGAUCGUAAUGUGGAAAUGUUUAUGAACAUUGAAAAAACAUUGGUGCAGAACAAUUGUUUGACCAGACCCAACAUCUACCUCAUUCCAGACAUUGAUCUGAAGUUGGCUAACAAAUUGAAAGAUAUCAUCAAACGACAUCAGGGAACAUUUACGGAUGAGAAGUCAAAAGCUUCCCACCACAUUUACCCAUAUUCUUCCUCACAAGACGAUGAAGAAUGGUUGAGACCGGUGAUGAGAAAAGAGAAGCAAGUGUUAGUGCAUUGGGGCUUUUACCCAGACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-126.6 kcal/mol

Ensemble Metrics

Free Energy: -138.31

Frequency: 0.0000

Diversity: 165.72

Structure Visualization

Structure Prediction

MFE Structure Prediction

(.(((((.((((((...))).((((((........(((((((.(((((..(((((((((.(((....(((......)))))))))))).)))))))).)))))))(((.(((...((((((........(((((..........((((..(((((((((.(.......).)))))).)))..).)))......)))))))))))))).)))(((((........)))))(((..(((.....)))..)))....((((((....))))))........)))))))))))))))(((((((...((((((.........(((((((..........(((((.((((...........................)))).)))))..........))))))).........((((((((((...((((.((((..(((((.((.......)).))))))))).))))...)))).........).))))).(((((....))))).))).)))....)))))))

Thermodynamic Ensemble Prediction

,.((({{.((,((,.{{{||...,,,,..,{{{{{(((((((,((((({,(((((((({{(((....(((......)))))))))))).))}))))).)))))))|{(,((,...((((((.....{{{((,(({,.((({,,.((({.{(((((((((.{.......}.)))))).)))}.).}))......}}},,,,|||||||.||{(((,,.,}||.|,..,|||||}}|{{{{||...||{{|||||.((((((....}))))).......,}||({{.||||||,,,,}))}|}})}|..}},.}}}.},,,||||||{{{{......||||,.{(((.....,,..}}}},,....}}}}.}}})),}.}))))}}........||,||,|{{{{.....})))).||||...{{{(.({{,,((((((.((.......)).))))))))).}))}...)))),..........,.})).}}))},..,},.}|}}}}}.....}})))))},