Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0034300

Sequence Length

163 nt

GC Content

0.3988

AACAAUUGUUUGACCAGACCCAACAUCUACCUCAUUCCAGACAUUGAUCUGAAGUUGGCUAACAAAUUGAAAGAUAUCAUCAAACGACAUCAGGGAACAUUUACGGAUGAGAAGUCAAAAGCUUCCCACCACAUUUACCCAUAUUCUUCCUCACAAGACGAUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-17.3 kcal/mol

Ensemble Metrics

Free Energy: -20.1

Frequency: 0.0107

Diversity: 39.32

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....((((((((......(((((.((....(((..........)))...)).))))).........(((......)))))))))))((((.(((.........((.((.(((((.....))))).)))).......)))....((((......)))).))))

Thermodynamic Ensemble Prediction

,...,((((((({..,,..(((((.((....(({.....,....}))..,)).))))).........|{,..,,,.||,}}}}}})),|||.(((.........((.((.(((((.....))))).)))).......)))....|(,{,.,,..,})).))})