Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0035100

Sequence Length

498 nt

GC Content

0.4056

AACAAUUGUUUGACCAGACCCAACAUCUACCUCAUUCCAGACAUUGAUCUGAAGUUGGCUAACAAAUUGAAAGAUAUCAUCAAACGACAUCAGGUAAUAGACACAAUCACUUCAGAUAAUAAUAGACACGAUCACUUCAUUUUGUAGUUGUAAGCCUCUAAUAAAUGACAACCAUAGUAAUGUUUUGGAUUUUUUGAUAUAUUUGCAUCAAAAGAAAUUUUUUUCUUGAGUUUUUUUUUUUUUUUUCUUUUUAGAGAUGAGGUGUCACUUUGUUGCCCAGGCUGGAAUGCAAUGGCACUAUCCUAGCAUCCUUGCUCACUGUAGCUUUGGACUUCUGGGCUCAAGAGAUCUUCCAGUUUUUUUGUUGUUGUGGUUGAGAGAGUCUCGCGCUGUCGCCCAGGCUAGAGUGUAGGGGUGCAAUCCCGGUUCAUUGCAUCCUCUGCCUCCGAGGUUCAAGUGAUUCUCGUGCCUCAGCCUCCGAAAUUGCUGGGACUACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-114.8 kcal/mol

Ensemble Metrics

Free Energy: -125.91

Frequency: 0.0000

Diversity: 166.3

Structure Visualization

Structure Prediction

MFE Structure Prediction

........((((((((.(..(((((..((((((((((((((((((((((((((((..........((((...(((.((.......)).)))...))))..........)))))))))...................((((((..(((..(....)..)))..)))))).........))))).))))))....(((((........)))))((((((....)))))).................((((....))))))))))))...((((...((((((((((((.(((....)))...))).))).(((..(((......)))...)))...))))))...))))...............))))).).))))))))..(((((((((...(((...(((((.(((.(((((((((((((........))))))))).))))))).(((((.(.((.....)).).)))))))))).)))...))).))))))....

Thermodynamic Ensemble Prediction

{,{....|||({...,{,,,{{{{{..{((((((,(((((((((((((((((((({(,,,.....,(((...(({.{{.......)).}))...}}}),,.,....,.))))))))).......,....,,,....{{{{{{.,{{(,,|,...,..)))..}}}}}}.........))))))))))))..,{(((((........)))))||((((,,,.,,,,,.}}},,,,..........{(((....)))))))))))},,,{{{{,..(((((((({(((.(((,,,,|}|,,.}}}.}||,(((,,(({.....,|||...}}}...}}}}||.||||||{.,{,,{{|,,,|||||.,},,|.|||}|||,,{{{|||{{{|..,||},.|||||,{||.|{{{(((|((({{........))))))))).))))))}.{{|||.|.||,)},,)),}.}})}))))},.})),,..))))))}}}.,,}