Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_STRN3_0009300

Sequence Length

817 nt

GC Content

0.4137

GCCCGGAUUGCAUUUCUACAAGGCGAAAGAAAAGGUCAAGAGAACCUGAAGAAGGACUUAGUAAGAAGAAUAAAGAUGUUAGAGUAUGCAUUAAAACAAGAAAGGGCAAAAUAUCACAAAUUAAAAUAUGGCACGGAACUGAACCAAGGUGACUUGAAAAUGCCAACCUUUGAGUCAGAAGAAACCAAAGACACAGAGGCUCCCACAGCACCUCAGAAUAGCCAGUUAACGUGGAAGCAAGGCAGACAGCUUUUAAGACAGUAUCUUCAGGAAGUAGGUUAUACAGAUACAAUAUUAGAUGUACGGUCUCAGCGGGUAAGGUCAUUACUUGGACUAUCUAAUUCAGAACCAAAUGGAUCAGUAGAAACAAAGAAUUUAGAACAGAUCCUGAAUGGAGGUGAAUCUCCUAAGCAAAAGGGACAAGAAAUAAAAAGGUCCUCUGGUGAUGUUCUUGAGACGUUCAAUUUCUUAGAAAAUGCCGAUGACAGUGAUGAAGAUGAGGAAAAUGACAUGAUCGAAGGCAUCCCAGAAGGAAAAGACAAACAUCGGAUGAAUAAACAUAAAAUAGGUAAUGAAGGUUUAGCUGCUGACCUAACUGACGAUCCUGAUACUGAGGAAGCACUGAAAGAAUUUGAUUUUUUAGUGACUGCUGAAGAUGGUGAAGGAGCUGGAGAAGCACGGAGUUCGGGGGAUGGCACAGAAUGGGAUAAAGAUGACCUCUCCCCAACUGCUGAGGUUUGGGAUGUAGACCAGGGACUAAUAAGUAAACUGAAGGAACAGUACAAGAAGGAACGAAAGGGGAAGAAAGGGGUGAAGA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-173.6 kcal/mol

Ensemble Metrics

Free Energy: -191.31

Frequency: 0.0000

Diversity: 167.83

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((...((((.(((((....(((..........)))..(((..(((.....))).)))...............(((((........)))))......)))))..))))...................(((((...........((((....))))....))))).((((((.(((.............))).)))))).((((.....(((((((....((((.....(.((((..(...((...((((((((....((.(((((((((...((.(((((((((..((......))..)))).((((..(((((.((((.((((((((((...(((...(((((...((....(((((.((..................)).)))))((...((((......))))....))....((((.............))))(((((.((((((.((((..((((((.(((((((....((..(.......)..)).....)))))))..))).))).)))).))))))))))).................)).)))))....)))...))))))))))...)))).)))))))))))))).))..((((.......))))((((((((((((......)))))))))).)).))))))))).)).)))))))).....))...)..)))).)...)))).(((...((((...((.....)).))))...))))))))))((((........))))..(((....)))..((((......)))).................))))......)))).....

Thermodynamic Ensemble Prediction

((((...{(({.{((((((,{({{........{{|||....}.,|||.....,,}.))}.}}..,},.......(((((........)))))......,....}})),.....{{,,...........(((((.,........,((((....))))....))))).((((((.(((.............))).)))))).((((.....(((((((....((({,,,..,.{{{,,,|..}||...((((((((....((.(((((((((...((,,{{,.{{{,..({,.....,}..)))},(({,{((((((.((((.((((((((((...{,{.,.(((((...((,...(((((.{{.,,,........}}}...}}.))))),,..}||{{.,,,.}}|||,........}|||,.............,|||(((((.((((((.((((..((((((.(((((({....{{.,,.......),.,}.....)}))))),.))).))).)))).))))))))))}.}}}...........,,,,.}}},,....}}....))))))))))...)))).))))))))),,}}}.,,..((((.,.....)))),{((((((((((......)))))))))).)).))))))))).)).)))))))).....}}...,,{||,|{|{{{,|||,({,...,,,.....,.,,.}))})))).}})),))))))){(((........))}}..{({....}}}..((((......))))................,)))}......}))),....