Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_TLK1_0006600

Sequence Length

258 nt

GC Content

0.4302

AGAUAACAGUAUAGCAACAACUCUGCCACUGAAAUCCUGUUCUCUGACCGAUAUUGGCACCUGCAAAGAGAAACAACCAGUAACAGGCAGCAGCAGCAUCAGUAUUAAUCUUCCAUGAUGAAAUCUUUACAGGUCAAGAACAAGUACACAGCUCUUUUCUCACUCCUUCACAGUGGACCAUGCAACUAGUUGAAAUGGAAGACAAUGGAUUGUCUACAAGCCUUUUGAACAGUGGAGAAUGCAGGGCGUUGGCUUUAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-46.3 kcal/mol

Ensemble Metrics

Free Energy: -52.37

Frequency: 0.0001

Diversity: 100.17

Structure Visualization

Structure Prediction

MFE Structure Prediction

.(((..((((...(((.......))).))))..)))(((((((.((((((((((((((..((((........((.....))........))))..))..))))))).(((......)))............))))))))))((((.((..(((((.(((((..(((........))).......(((.(((.(((.((.((((((....)))))).....)).))).)))))).)))))...)))))..)))))).))

Thermodynamic Ensemble Prediction

.(....|,,({.{((({{..{{{{{{.|{{{,....{(((({{(((,(({,((((((,..{(,{.....,......}}}))}...})}}).))}}),,})))).,,.,((.....,))},...,{,{{{{.|||||||||,,,({..,,.|||{{.|{{{({{(,,,,,,.||||},{{,{.{{|....}}},.}})),{||{{{....})))}),,...,,,}}))}.,,))))))),.)))))),)))}))).)).