Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_TLK1_0009700

Sequence Length

437 nt

GC Content

0.3867

GCUAACUGUGAUCUCAGACGGCAAAUAGAUGAACAACAAAAAUUACUUGAAAAAUACAAAGAACGAUUAAAUAAGUGCAUAUCAAUGAGCAAGAAACUUCUUAUUGAAAAGAGUACACAAGAAAAGCUGUCAAGCAGAGAGAAGAGUAUGCAAGAUCGAUUACGCCUCGGGCACUUUACAACAGUUAGACAUGGCGCUUCAUUUACUGAACAAUGGACAGAUGGUUUUGCAUUUCAGAAUCUUGUGAAGCAACAAGAAUGGGUGAAUCAGCAAAGGGAAGAUAUUGAAAGGCAAAGGAAACUUCUAGCCAAACGCAAACCUCCCACAGCUAAUAAUUCUCAGGCACCCUCUACCAAUUCUGAACCAAAACAAAGGAAAAACAAAGCAGUCAAUGGAGCAGAGAAUGAUCCCUUUGUUAGACCAAAUUUACCACAACU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-77.7 kcal/mol

Ensemble Metrics

Free Energy: -85.73

Frequency: 0.0000

Diversity: 79.07

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((((((((((..((((((.......................(((..........))).............((((...((((((((.(((...))))))))))).....)))).........))))))..(((............))).)))))......(((...)))........)))))))).)((((.((((((((.((((...............((((((...(((((((((((((......)))))...(((((....(((...((((.(...(((...(((.(((....)))...))).....))).).))))...))).............))))).......)))))))).))))))...............)))).))))))))((((........))))...............)))....)

Thermodynamic Ensemble Prediction

(((,(((,(..((((.((((((....................,,.,((,.........},,.............((((.{.((((((((.(((...)))))))))))...,.)))).........)))))).....))))..}.}}}{{(({{(({(,....{(((,,.,}},,,.....,,}))},}.},,||}|,((((((.,{{{...,,,},.....,}||||||}},(((((((((((((......)))))}..(((((..,.(((...((((.(...,{(...(((.{((,,..})),,.))).....}},.,.))))...))).............))))).......,))))))),|,,,,,...},........}})|||.,,||||||((((........))))}}}............)))..}})