Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_TSN_0000300

Sequence Length

307 nt

GC Content

0.4104

GAAAUCAGAAAAGUUGUACAGAGUUUAGAACAAACAGCUCGAGAGAUUUUAACUCUACUGCAAGGGGUCCAUCAGGGUGCUGGGUUUCAGGACAUUCCAAAGAGGUGUUUGAAAGCUCGAGAACAUUUUGGUACAGUAAAAACACAUCUAACAUCUUUGAAGACCAAAUUUCCUGCUGAACAGUAUUACAGAUUUCAUGAGCACUGGAGGUUUGUGUUGCAGCGCUUGGUCUUCUUGGCAGCAUUUGUUGUGUAUUUGGAAACAGAAACACUAGUGACUCGAGAAGCAGUUACAGAAAUUCUUGGCA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-62.8 kcal/mol

Ensemble Metrics

Free Energy: -71.46

Frequency: 0.0000

Diversity: 120.37

Structure Visualization

Structure Prediction

MFE Structure Prediction

....((((((...(((((..(((((..........))))).((((.......))))(((((...(((((.........((((((((((..(...(((((((((.((((((....((.(((((...))))))).......)))))).))).........(((((((((......((((((((......(((((((((..(....)..)))))))))))).))))).)))))))))...(((((....)))))....)))))).).))))).)))))))))).....))))))))))...))).)))..

Thermodynamic Ensemble Prediction

{....,,,.,..,{({(..,(((((,..,,,...,,}|||,(({{,,,....}}}}.{((({{((((,(((.,.{(((((((({((({,((({{{{{,...||}||||}},,}}}}}|{{|,.,.}}))}}}...,,....,,,,.,},.....,,.,|{{((((((,,,,,{((({,,.,.,,,.{{((((((((..{....}..))))))))))})}))))),))))}))))}}}|||},....}},((((.((((....)))).))))..|{{{|||,....}.))))))..,,})))},})}}