Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_TTC3_0016200

Sequence Length

550 nt

GC Content

0.4073

GGCCUACACACCUAGGAGUUUAUCAGCACCUAUAUUUACUACUUCACUUAACUUUGUGGAGAAGGAAAGAGAUUUCAGAAAAAUUAAUCACGAAAUGGCCAACGGUGGUAAUCAGAAUCUAAAGGUGGCGGAUGAGGCGUUGAAGGUAGAUGAUUGUGACUGUCAUCCUGAAUUUUCACCACCAUCAAGUCAGCCUCCAAAACAUAAAGGAAAACAAAAAUCUCGAAACAAUGAAUCAGAAAAGUUCAGUUCUAGUUCACCAUUGACUUUACCAGCAGAUUUGAAGAACAUCUUGGAGAAACAGUUUUCUAAAUCUUCCAGAGCUGCACACCAGGAUUUUGCUAAUAUAAUGAAAAUGCUGAGAAGCUUAAUUCAAGAUGGCUAUAUGGCCUUAUUGGAGCAGCGUUGCCGCAGCGCUGCACAGGCCUUUACAGAGUUGCUGAACGGUUUAGAUCCUCAAAAAAUAAAGCAAUUGAACCUGGCCAUGAUUAACUAUGUUUUGGUCGUCUAUGGACUUGCCAUUUCUCUCCUUGGAAUAGGACAGCCUGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-127 kcal/mol

Ensemble Metrics

Free Energy: -138.2

Frequency: 0.0000

Diversity: 167.84

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((.........((((.(((....))).))))......((.((((((........)))))).))((((....))))...............((((((((....((((((.....(((.....(((((((((......((((.......)))).......)))))).))).....)))))))))...((((((((..((((((((((................((((.....(((((.((((........)))).)))))...))))........((((.((((((((.....((((((((....)))))))).)))).)))).))))....(((.(((((............))))).)))..........(((((...((((....))))...)))))(((((((((...)))))))))...((((.......(((((((......(((.((...)).))).....)))))))......)))).........))))))))))..).))...)))))))))))))..((((......))))..)))....

Thermodynamic Ensemble Prediction

(((({.......{{{(,(({..{{{{{,,||,...,..((.((((((........)))))).)){{{{...,||}}...........}}..{{{{{{((,,..{{||||...{{((({,,...((((((,({({{,(,({({{{{{{.||||{{.....,,)))))),}..,}}))))}),)).}}{{{||{||,,((,,,,,,,,..||,...........,,.......(((((.((((........)))).)))))...})),.,,.....((((.((((((((.....((((((({....}))))))).))))},))).))))...,|{|}|||||,...........}},,)}))),..}}}},..(((((...((((....))))...)))))(((((((((...))))))))).,|||||.......{((((((....,,(((.{....},.,,......)))))))......)))),,|,,....}}}))}})))}}}||...,|}}},}}}}}|||..{{{{.,},,,})),.,)))})},