Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_UBAC2_0003500

Sequence Length

530 nt

GC Content

0.4415

ACAAGGCGCCUCUGUCGAAGAGCCUUCUGCUGGUCCCCAGUGCCCUCUCCCUCCUGCUCGCCCUCCUCCUGCCUCACUGCCAGAAGCUCUUUGUGUAUGACCUUCACGCAGUCAAGAACGACUUCCAGAUUUGGAGGUUGAUAUGUGGAAGAAUAAUUUGCCUUGAUUUGAAAGAUACUUUCUGCAGUAGUCUGCUUAUUUAUAAUUUUAGGAUAUUUGAAAGAAGAUAUGGAAGCAGAAAAUUUGCAUCCUUUUUGCUGGGUUCCUGGGUUUUGUCAGCCUUAUUUGACUUUCUCCUCAUUGAAGCUAUGCAGUAUUUCUUUGGCAUCACUGCAGCUAGUAAUUUGCCUUCUGGAUUCCUGGCACCUGUGUUUGCUCUGUUUGUACCAUUUUACUGCUCCAUACCAAGAGUCCAAGUGGCACAAAUUCUGGGUCCGUUGUCCAUCACAAACAAGACAUUGAUUUAUAUAUUGGGACUGCAGCUUUUCACCUCUGGUUCCUACAUCUGGAUUGUAGCCAUAAGUGGACUU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-120.6 kcal/mol

Ensemble Metrics

Free Energy: -132.94

Frequency: 0.0000

Diversity: 190.06

Structure Visualization

Structure Prediction

MFE Structure Prediction

..(((((.(.((....)).).)))))..(((((...)))))............((((...(((............(((((..((((.((.........)).))))..)))))......(((((((((....)))))))))...(((((..((.((((..((((.((((((.....((((..(((((((.(..((((................((((((......))))))(((.(((((...))))).)))...(((((((.(((.((((....(((((......))))).....)).))..))).))).)))).........)))).))))))))..))))...((((...(((((((.(((....((((...((....................))..))))))).)))))))...))))))))))..))))..))))))..)))))..(((....)))...........)))...))))...(((((...(((...(((((.......))))))))...)))))...

Thermodynamic Ensemble Prediction

.(((((({.,,,...,{{{{{||||{{(((,(({,,|||{{{.............|,..,,.........},...{{{{{,,||||,||,,,,.....)).||||.,|||}|...,..(((((((((....)))))))))...|||||}}|.,,,,,..||||}|,,,,({{((.,,||}}|{((((,.,.||||{,,.,,,...,,,{|{,{{{{||.,,,..}}}|||(((.(((((,,,|}}||,}}}...,((((((.(((.{(((....(((({......})))).....)),}}..))).))).)))|,........||||.|||}|}}|{{||,|,{,{{{{...{|||||{}|||}...,|||..,||,..{..,||.,.|||,,.,,))||)))},},.)))}|||.||))||||}}}||,||||..|}||||..,,,,,..,..}}}},})...........||||||}}}|..,|||,,,,.|)}}}}},..,.,,}}}})))|)}}),..,)))))},