Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_VIM_0006100

Sequence Length

351 nt

GC Content

0.4786

AAUGAGUCCCUGGAACGCCAGAUGCGUGAAAUGGAAGAGAACUUUGCCGUUGAAGCUGCUAACUACCAAGACACUAUUGGCCGCCUGCAGGAUGAGAUUCAGAAUAUGAAGGAGGAAAUGGCUCGUCACCUUCGUGAAUACCAAGACCUGCUCAAUGUUAAGAUGGCCCUUGACAUUGAGAUUGCCACCUACAGGAAGCUGCUGGAAGGCGAGGAGAGCAGGAUUUCUCUGCCUCUUCCAAACUUUUCCUCCCUGAACCUGAGGGAAACUAAUCUGGAUUCACUCCCUCUGGUUGAUACCCACUCAAAAAGGACACUUCUGAUUAAGACGGUUGAAACUAGAGAUGGACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-99 kcal/mol

Ensemble Metrics

Free Energy: -105.43

Frequency: 0.0000

Diversity: 88.08

Structure Visualization

Structure Prediction

MFE Structure Prediction

..(((((((((((....))))..((((..(((((.(((....))).)))))...)).))......((((.......))))...(((.((((.(.((.((((.....))))(((((((((((....((((....))))...))).......((((((((((((......))))))))))))...(((.((..(((....)))..))..)))((((((.(((((.....)))))))))))......)))))))))).).)))).)))..........))))))).(((((((((((...(((..((.((..((((...))))..)).))..)))...))))))))..)))...

Thermodynamic Ensemble Prediction

..(((((((((((....))))..{{|{..{{((({(((,..,}},.}})))...||.||,.....((({.......))))...{,,{((((.({,,{(((({{,..||||{((({,,.,,,,}}.|||{.}}}}))),,.}))...}}},|(((((((((((......)))))))))))}...(((.,(,,(((....))).}))..)))((((((.(((((.....))))))))))).....,})))}|||||.,.,,,,))))}......,,.))))))).(((((((((((...(((..,(..,..((({...})))..,,.,)..)))...))))))))..)))...