Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_YAP1_0003300

Sequence Length

344 nt

GC Content

0.5233

GUCCUCUUCCUGAUGGAUGGGAACAAGCCAUGACUCAGGAUGGAGAAAUUUACUAUAUAAACCAUAAGAACAAGACCACCUCUUGGCUAGACCCAAGGCUUGACCCUCGUUUUGCCAUGAACCAGAGAAUCAGUCAGAGUGCUCCAGUGAAACAGCCACCACCCCUGGCUCCCCAGAGCCCACAGGGAGGCGUCAUGGGUGGCAGCAACUCCAACCAGCAGCAACAGAUGCGACUGCAGCAACUGCAGAUGGAGAAGGAGAGGCUGCGGCUGAAACAGCAAGAACUGCUUCGGCAGGCAAUGCGGAAUAUCAAUCCCAGCACAGCAAAUUCUCCAAAAUGUCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-97.8 kcal/mol

Ensemble Metrics

Free Energy: -103.21

Frequency: 0.0002

Diversity: 102.62

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((((((((((...((((.......))))...)))))).)))).........................(((((.....)))))...........)))(((((.(((((((......))))..))).....((..((((((((((.(.(....(((.....(((((((((....)))))...)))).)))....).).))).))).))))..))..(((........)))..((((((...)))))).(((((((......((((..((((.....(((....((((....))))....)))(((.......))))))).))))...)))))))....)))))

Thermodynamic Ensemble Prediction

(((((((((((((...((((.......))))...)))))).))))......................,..{{{{{.....}}}||,,,.,,,,,..|||{{(({.{{,{({(.,....}},,..|||,,|..{{..{{((((({{,.(.,..,,(((..{,{((,((((((,,,.}}}},....))).))}}},,.})}))|,|||..|||{..|,.(((........)))..((((((...)))))).|||{{,,}}}}..||||,,||||.....(((....((((....))))....)))(((.......)))}))),)}))..,))))))}....)}}})