Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_YAP1_0004600

Sequence Length

361 nt

GC Content

0.5346

CCAUGAACCAGAGAAUCAGUCAGAGUGCUCCAGUGAAACAGCCACCACCCCUGGCUCCCCAGAGCCCACAGGGAGGCGUCAUGGGUGGCAGCAACUCCAACCAGCAGCAACAGAUGCGACUGCAGCAACUGCAGAUGGAGAAGGAGAGGCUGCGGCUGAAACAGCAAGAACUGCUUCGGCAGGCAAUGCGGAAUAUCAAUCCCAGCACAGCAAAUUCUCCAAAAUGUCAGGAGUUAGCCCUGCGUAGCCAGUUACCAACACUGGAGCAGGAUGGUGGGACUCAAAAUCCAGUGUCUUCUCCCGGGAUGUCUCAGGAAUUGAGAACAAUGACGACCAAUAGCUCAGAUCCUUUCCUUAACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-104.7 kcal/mol

Ensemble Metrics

Free Energy: -111.21

Frequency: 0.0000

Diversity: 113.48

Structure Visualization

Structure Prediction

MFE Structure Prediction

...((....((.(((...(((.(((((((((((((.....((..((((((.(((((((((..........))).)).)))).))))))..))..(((((....(((........)))..((((((...)))))).)))))..((((((((((..((((.....(((....((((....))))....)))(((.......))))))).))))...))))))...(((.((((.......))))))).............)))))))))((((((.((((........)))).)))))).(((.(((....))).)))((((....))))...........)))).)))...)))))...)).

Thermodynamic Ensemble Prediction

...{(....,(,(((...{{{.(((((((((((((...,,(({.((((((.(((((((({.|........))).)).))}}.)))))|{,||..((((..,,.(((........)))..((((((...)))))).}))}}..||||.,|||||,((((....,({{....((((,...))}},,..|||(({.......)))}})),,,|}...}}||||.....,...|}}},,.,}}})))}||},,..,}.,...)))))))))|(((((.((((........)))).)))))},|,.,{,|,{{{|||({{{.{||||..,,.|,.,........,))),)}),,,)))}}...}}.