Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_YAP1_0004700

Sequence Length

474 nt

GC Content

0.5274

CCAUGAACCAGAGAAUCAGUCAGAGUGCUCCAGUGAAACAGCCACCACCCCUGGCUCCCCAGAGCCCACAGGGAGGCGUCAUGGGUGGCAGCAACUCCAACCAGCAGCAACAGAUGCGACUGCAGCAACUGCAGAUGGAGAAGGAGAGGCUGCGGCUGAAACAGCAAGAACUGCUUCGGCAGGCAAUGCGGAAUAUCAAUCCCAGCACAGCAAAUUCUCCAAAAUGUCAGGAGUUAGCCCUGCGUAGCCAGUUACCAACACUGGAGCAGGAUGGUGGGACUCAAAAUCCAGUGUCUUCUCCCGGGAUGUCUCAGGAAUUGAGAACAAUGACGACCAAUAGCUCAGAUCCUUUCCUUAACAGUGGCACCUAUCACUCUCGAGAUGAGAGUACAGACAGUGGACUAAGCAUGAGCAGCUACAGUGUCCCUCGAACCCCAGAUGACUUCCUGAACAGUGUGGAUGAGAUGGAUACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-138.6 kcal/mol

Ensemble Metrics

Free Energy: -146.61

Frequency: 0.0000

Diversity: 152.59

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((...(((.(...((((...(((((((((((((.....((..((((((.(((((((((..........))).)).)))).))))))..))..(((((....(((........)))..((((((...)))))).)))))..((((((((((..((((.....(((....((((....))))....)))(((.......))))))).))))...))))))...(((.((((.......))))))).............))))))))).((.(.(.(((((.(....((((.(((((......(((.((((.(((((.(((((.....((.....))....))))).))))..........).)))))))...((((((.....))))))..))))).))))...(((.......)))...).))))).).).)).......)))).))))....).))).....))))......

Thermodynamic Ensemble Prediction

((((...,,({{{,.{{{{{(,{{{((((((((((...,,(({.((((((.(((((((({.|........))).)).))}}.)))))|{,||..((((..,,.(((........)))..((((((...)))))).}))}}..||||.,|||||,((((....,({,....((((,...))}},,..|||(({.......)))},)),,,}}...}}||||.....,.,,||}},,.,}}})))}||},,..,}.,...)))))))))}{(.{|{|(({,{.|....{(({.(((({......(((.((((,{(({{.{((({.....{{.....,,....))))),)}}},,,,,.....),))|}}}}...((((((,...,))))))..)))}).)))},,.,((....}}.))}.,.|{||||}{|...,}{{{.,{..,,,.,,},...,).))).,..}},))}}}}.}