Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_YES1_0003400

Sequence Length

453 nt

GC Content

0.3775

GUGGUGUUACUAUAUUUGUGGCCUUAUAUGAUUAUGAAGCUAGAACUACAGAAGACCUUUCAUUUAAGAAGGGUGAAAGAUUUCAAAUAAUUAACAAUACGGAAGGAGAUUGGUGGGAAGCAAGAUCAAUCGCUACAGGAAAGAAUGGUUAUAUCCCGAGCAAUUAUGUAGCGCCUGCAGAUUCCAUUCAGGCAGAAGAAUGGUAUUUUGGCAAAAUGGGGAGAAAAGAUGCUGAAAGAUUACUUUUGAAUCCUGGAAAUCAACGAGGUAUUUUCUUAGUAAGAGAGAGUGAAACAACUAAAGGUGCUUAUUCCCUUUCUAUUCGUGAUUGGGAUGAGAUAAGGGGUGACAAUGUGAAACACUACAAAAUUAGGAAACUUGACAAUGGUGGAUACUAUAUCACAACCAGAGCACAAUUUGAUACUCUGCAGAAAUUGGUGAAACACUACACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-96.5 kcal/mol

Ensemble Metrics

Free Energy: -106.25

Frequency: 0.0000

Diversity: 101.58

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((((((((...((.((((.(((((....))))).)))).)).........(((((((......)))))))(((....))).......................(((((((..........)))))))((((((........(((.......)))........))))))..(((((((.((((((..(.(((((........))))).)..)))))).............(((((....)))))....(((.(.......).)))(((((((((.....)))))))))............((((((...((((((((..((........))..))).)))))((((....(((...(((((.......((....))......)))))..)))....)))).....))))))..........)))))))....)))))..)))))))....

Thermodynamic Ensemble Prediction

((((((((((((...((.((((.(((((....))))).)))).)}.........(((((((......))))))){{,...,|}}.....................,,{{((({(......},,.}))}})}((((((.....,..{((.......))}..,.....)))))),.(((((((.{(((((..(.(((((,.......}}||}.}..}}}}}}.........||||||||{,,|.})))}|...|||,|...,,..,.})}{{{((((((.....)))))}||}.....,,|,,..((((((...((((((((..((........))..))).)))))((({....(((...(((((.....,{((,...))},,...}))))..|}}..,.))))..,,.))))))..,,,,....)))))))....))))}.,)))))))....