Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ZNF609_0006900

Sequence Length

226 nt

GC Content

0.5354

AUGGAGUCCCCUGUUUCCACACCAGCAGUGCUGCCAAUACACCUUUUGGUGCCAGUGGUCAACAAUGACAUCUCAUCUCCCUGUGAGCAGAUCAUGGUUCGUACCCGAUCAGUUGGGGUCAACACAUGUGAUGUGGCUCUGGCCACAGAGCCUGAGUGCUUGGGCCCCUGUGAACCUGGAACUAGCGUCAACCUUGAAGGCAUCGUGUGGCAGGAAACAGAAGAUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-67.6 kcal/mol

Ensemble Metrics

Free Energy: -71.62

Frequency: 0.0015

Diversity: 64.44

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....(((..((((((((...(((((.(((((..(((..((((....))))......((((....))))..(((((......)))))((...(((((((.(..(((((....)))))..)))).))))...)).(((((((....)))))))(((.((((.(..((...........))..).)))))))...)))..))))).)).)))..))))))))..))).

Thermodynamic Ensemble Prediction

.....(((..((((((((...(({{(.(((((..(({..((((....))))...,.,((({....})))..(((({......))))}{{,.,({{((((.(.,((({{....,}|)),,|}}}.}}}},..||,(((((((....))))))){{{.||{|,||,|||,.,,,..,,.))..)})))}))}...}))..))))).)),)))..))))))))..))).