Basic Information

Symbol
CCDC18-AS1
RNA class
lncRNA
Alias
ENSG00000223745.1 ENSG00000223745.3 ENSG00000223745.7 ENST00000440778.1 OTTHUMG00000010705.3 RP4-717I23.3 XLOC_000918 linc-TMED5
Location (GRCh38)
1:93261702-93346434
UCSC Genome Browser Search in Marker Scope
Forensic tag(s)
Other applications
External database
HGNC NCBI Ensembl LNCipedia RNAcentral

Transcripts

ID Sequence Length GC content
CCDC18-AS1:19 CAUUCCUGUGGGUCAACUAUGCAACUAACUCAGAUUUUGAGCAAACAAA… 2278 nt 0.4197
CCDC18-AS1:2 GUGGCUGCCGCCGUGGCCGCGUAGCCCGAACGCAGAUCGUGGAAGCCGA… 1212 nt 0.4926
CCDC18-AS1:20 UGCAACUAACUCAGAUUUUGAGCAAACAAAGCUCUCAAGUUGGUGAUCC… 2186 nt 0.4181
CCDC18-AS1:21 AACUCAGAUUUUGAGCAAACAAAGCUCUCAAGUUGGUGAUCCUCAGGAG… 431 nt 0.4408
CCDC18-AS1:22 UCUGGAAUUAUCUUCUAAGUCAACUGUGGGUUGGGUAGGUGGCUCUGCU… 1373 nt 0.4297
CCDC18-AS1:23 CUCACAUUCCUCAAGCAGAUAACUGAUACCGUGCUUCCAGAAGAUUUUU… 600 nt 0.4033
CCDC18-AS1:24 CUUGGGAAAACAAGUCUGUUUGCCCAAUUUGGGUCAUAUUUCCACGUCC… 891 nt 0.4209
CCDC18-AS1:25 GAGGUGUCACUGUGAGCUGUGUCGGUGCCUUAAGAGAUAUCUGUUGUGU… 596 nt 0.4295
CCDC18-AS1:26 GUGUCACUGUGAGCUGUGUCGGUGCCUUAAGAGAUAUCUGUUGUGUCUU… 413 nt 0.4262
CCDC18-AS1:27 GAAUGAUUGGGAACCAAUGAAUAGUUGUUCAGUAAAUGGUUUAUAUUUU… 535 nt 0.4019
Showing 11 to 20 of 71 entries
Summary

No relevant information is available at the moment.

Forensic Context

A single-nucleus transcriptomics study of human postmortem nucleus accumbens tissue identified the CCDC18-AS1 as a long non-coding RNA downregulated in the ASC.1 astrocyte subcluster in individuals with alcohol use disorder [Van Den Oord et al. DOI:10.1111/Adb.13250].