Basic Information
Symbol
lnc-CYSTM1-1
RNA class
lncRNA
Alias
AC011379.2
CTB-131B5.5
ENSG00000254363
ENSG00000254363.1
ENSG00000254363.2
ENSG00000254363.6
LOC101929719
OTTHUMG00000163536.1
XLOC_004577
linc-C5orf32-1
Location (GRCh38)
5:140157319-140174023
Forensic tag(s)
Sudden cardiac death diagnosis
External database
Transcripts
| ID | Sequence | Length | GC content |
|---|---|---|---|
| lnc-CYSTM1-1:1 | AAUAGACGAUGCCGCAGCAGCCCAGCCUCCAGCGUCUGGGGACAAAAGC… | 583 nt | 0.4837 |
| lnc-CYSTM1-1:10 | GUUACAACACCACCAAAUGGACUAAGACAAGUAUUUAUCCAAAGGAAAU… | 848 nt | 0.4634 |
| lnc-CYSTM1-1:11 | GUCAGACUUGAUCCUGCAGGGAAUGGGAAACCCCUGCAGAAUUUAUAGU… | 2257 nt | 0.4852 |
| lnc-CYSTM1-1:12 | CCCAGCAUCAGAUGGUUCCAUGCCAACCUCCUCCAUGGCUAGGUGUUGG… | 458 nt | 0.4498 |
| lnc-CYSTM1-1:13 | CAGAUAUAGAUAUAGGUGUUCUGGUCUUGACCCUACCACUCAUUUCCUG… | 1072 nt | 0.4851 |
| lnc-CYSTM1-1:2 | UGAGACAGGGUUUUGCUCUGUUGCCCAGGCUGGAGUGCAGUGGUGUGAU… | 5951 nt | 0.4594 |
| lnc-CYSTM1-1:3 | CCUGGGUAUACACAUGGCUCAGUUCCUCAUUUGGUUCUGUCUAAUGUCA… | 5601 nt | 0.4558 |
| lnc-CYSTM1-1:4 | CCUGGGUAUACACAUGGCUCAGUUCCUCAUUUGGUUCUGUCUAAUGUCA… | 5633 nt | 0.4440 |
| lnc-CYSTM1-1:5 | AAACUCCAUCUCAAAAAAAAAAAAAAGAAAGAAAGAAAGAAGAAAUUCU… | 4829 nt | 0.4492 |
| lnc-CYSTM1-1:6 | AAACUCCAUCUCAAAAAAAAAAAAAAGAAAGAAAGAAAGAAGAAAUUCU… | 4752 nt | 0.4505 |
Showing 1 to 10 of 13 entries
Summary
No relevant information is available at the moment.
Forensic Context
A study in humans using RNA sequencing of patient blood samples identified the lnc-CYSTM1-1 as a long non-coding RNA that was upregulated in myocardial fibrosis compared to acute myocardial infarction [Wang et al. DOI:10.3389/fcvm.2021.664044].