Basic Information

Symbol
lnc-FGF9-3
RNA class
lncRNA
Alias
AL136962.1 ENSG00000231330 ENSG00000276476.2 LINC00540 XLOC_010302 linc-SGCG-7
Location (GRCh38)
13:22040920-22281506
UCSC Genome Browser Search in Marker Scope
Forensic tag(s)
Drug abuse diagnoses
External database
HGNC NCBI Ensembl LNCipedia RNAcentral

Transcripts

ID Sequence Length GC content
lnc-FGF9-3:1 GGAAGUGACUGGAUGUGGAGAGGAGUGUAUCCGCGAAGGAACGCACAAG… 2412 nt 0.4515
lnc-FGF9-3:10 GGAAGUGACUGGAUGUGGAGAGGAGUGUAUCCGCGAAGGAACGCACAAG… 1418 nt 0.4492
lnc-FGF9-3:11 GGAAGUGACUGGAUGUGGAGAGGAGUGUAUCCGCGAAGGAACGCACAAG… 551 nt 0.5408
lnc-FGF9-3:12 GGAAGUGACUGGAUGUGGAGAGGAGUGUAUCCGCGAAGGAACGCACAAG… 449 nt 0.5702
lnc-FGF9-3:13 GGAAGUGACUGGAUGUGGAGAGGAGUGUAUCCGCGAAGGAACGCACAAG… 1410 nt 0.4787
lnc-FGF9-3:14 GGAAGUGACUGGAUGUGGAGAGGAGUGUAUCCGCGAAGGAACGCACAAG… 1112 nt 0.4568
lnc-FGF9-3:15 ACACCGAGCUACCCUGCCGGCAGCACAGAGUGAACAGCGCCGUGCACCC… 2309 nt 0.4266
lnc-FGF9-3:16 ACACCGAGCUACCCUGCCGGCAGCACAGAGUGAACAGCGCCGUGCACCC… 2698 nt 0.4407
lnc-FGF9-3:17 ACACCGAGCUACCCUGCCGGCAGCACAGAGUGAACAGCGCCGUGCACCC… 2521 nt 0.4347
lnc-FGF9-3:18 ACACCGAGCUACCCUGCCGGCAGCACAGAGUGAACAGCGCCGUGCACCC… 7286 nt 0.4179
Showing 1 to 10 of 18 entries
Summary

No relevant information is available at the moment.

Forensic Context

A study in human postmortem midbrain specimens from chronic cocaine abusers identified the lnc-FGF9-3 as a dysregulated long noncoding RNA, showing a 1.36-fold down-regulation in cocaine abusers compared to matched controls [Bannon et al. DOI:10.1111/jnc.13255]. This finding was part of a profile of 32 robustly dysregulated lncRNAs determined via custom microarray analysis, with the lnc-FGF9-3 classified as intergenic with nearest neighbors being clusters of other lncRNAs.