Basic Information
Symbol
lnc-FGF9-3
RNA class
lncRNA
Alias
AL136962.1
ENSG00000231330
ENSG00000276476.2
LINC00540
XLOC_010302
linc-SGCG-7
Location (GRCh38)
13:22040920-22281506
Forensic tag(s)
Drug abuse diagnoses
External database
Transcripts
| ID | Sequence | Length | GC content |
|---|---|---|---|
| lnc-FGF9-3:2 | AGGGGCUGGGCGGGCCGGCCCAGGGCCUGCCUAUGGCCUGAAAGAGAAA… | 2140 nt | 0.4346 |
| lnc-FGF9-3:3 | GUGAAAUUGCACAGUGUCAGGAAUGAUUUGCCAAUGUCUUCAGUAGGAU… | 325 nt | 0.4154 |
| lnc-FGF9-3:4 | UACAGGGAUUCAACAGAGUUGGAUUGCUGAGAAUAAAAUUACGGAUUUC… | 2010 nt | 0.4234 |
| lnc-FGF9-3:5 | UGCCACGCCCCUAUAAUGUGCCUUUAAAAGCCCAAGACCGUCGCUAGGC… | 1742 nt | 0.4443 |
| lnc-FGF9-3:6 | GGAAGUGACUGGAUGUGGAGAGGAGUGUAUCCGCGAAGGAACGCACAAG… | 2405 nt | 0.4520 |
| lnc-FGF9-3:7 | AGGGGCUGGGCGGGCCGGCCCAGGGCCUGCCUAUGGCCUGAAAGAGAAA… | 2142 nt | 0.4342 |
| lnc-FGF9-3:8 | AGUACUUGAGCUCAGUUUCGUGCAUUCCUAGUCCCUUUGCCUUUCUUGC… | 588 nt | 0.4133 |
| lnc-FGF9-3:9 | AGGGGCUGGGCGGGCCGGCCCAGGGCCUGCCUAUGGCCUGAAAGAGAAA… | 2143 nt | 0.4340 |
Showing 11 to 18 of 18 entries
Summary
No relevant information is available at the moment.
Forensic Context
A study in human postmortem midbrain specimens from chronic cocaine abusers identified the lnc-FGF9-3 as a dysregulated long noncoding RNA, showing a 1.36-fold down-regulation in cocaine abusers compared to matched controls [Bannon et al. DOI:10.1111/jnc.13255]. This finding was part of a profile of 32 robustly dysregulated lncRNAs determined via custom microarray analysis, with the lnc-FGF9-3 classified as intergenic with nearest neighbors being clusters of other lncRNAs.