Basic Information

Symbol
lnc-ITM2C-1
RNA class
lncRNA
Alias
GCSIR AC012507.2 AC012507.3 ENSG00000232520.1 LOC151484 OTTHUMG00000153828.1 XLOC_001897 linc-SPATA3
Location (GRCh38)
2:230886174-230904517
UCSC Genome Browser Search in Marker Scope
Forensic tag(s)
Forensic psychiatry evaluation
External database
HGNC NCBI Ensembl LNCipedia RNAcentral

Transcripts

ID Sequence Length GC content
lnc-ITM2C-1:1 GUGACUAGUGCAGGCUUCCUGGGGAACCAUUUGAGCUUUGAAGGUGGGG… 557 nt 0.5978
lnc-ITM2C-1:10 AGAGUGACUAGUGCAGGCUUCCUGGGGAACCAUUUGAGCUUUGAAGGUG… 1814 nt 0.5645
lnc-ITM2C-1:2 AGUGCAGGCUUCCUGGGGAACCAUUUGAGCUUUGAAGGUGGGGAAGAGG… 544 nt 0.6268
lnc-ITM2C-1:3 GGGAAGAGGAAUGUCAGAGAGUGGGCAAAAUACAACAGGAAAGGUCCAA… 1892 nt 0.5629
lnc-ITM2C-1:4 GGGAAGAGGAAUGUCAGAGAGUGGGCAAAAUACAACAGGAAAGGUCCAA… 1765 nt 0.5660
lnc-ITM2C-1:5 AGAGACGUGGGAGCCGAUGAAGGUCGCACGCCAGCCUCCCACCUGUGAG… 513 nt 0.4893
lnc-ITM2C-1:6 UCUCUGCCUGGGAAAGAAAAAGAGCCCAUUUCCAUGGGACGUGCCCUCA… 1020 nt 0.5814
lnc-ITM2C-1:7 GGGAAGAGGAAUGUCAGAGAGUGGGCAAAAUACAACAGGAAAGGUCCAA… 1893 nt 0.5626
lnc-ITM2C-1:8 AGAGUGACUAGUGCAGGCUUCCUGGGGAACCAUUUGAGCUUUGAAGGUG… 553 nt 0.6239
lnc-ITM2C-1:9 AGAGUGACUAGUGCAGGCUUCCUGGGGAACCAUUUGAGCUUUGAAGGUG… 560 nt 0.5964
Summary

No relevant information is available at the moment.

Forensic Context

A review of postmortem human brain studies found that the lnc-ITM2C-1 was upregulated in the anterior cingulate cortex of subjects with major depressive disorder who died by suicide [Yoshino & Dwivedi DOI:10.3389/fpsyt.2020.543893].