Basic Information
Symbol
lnc-PTPA-1
RNA class
lncRNA
Alias
IER5L-AS1
AL158151.1
AL161785.2
AL161785.3
ENSG00000204055.4
ENSG00000235007
ENSG00000235007.2
ENSG00000241084
ENSG00000241084.1
OTTHUMG00000020776.1
OTTHUMG00000020777.2
OTTHUMG00000046130.3
RP11-247A12.2
RP11-344B5.3
RP11-344B5.4
XLOC_007581
linc-C9orf106-3
Location (GRCh38)
9:129201315-129261581
Forensic tag(s)
Chronological age estimation
External database
Transcripts
| ID | Sequence | Length | GC content |
|---|---|---|---|
| lnc-PTPA-1:1 | GAAGCCCUGAUUCCUUGGAGAAAGGCUUGCAGCCCCUCUCCUUCCUGGA… | 559 nt | 0.5796 |
| lnc-PTPA-1:2 | GAAGCCCUGAUUCCUUGGAGAAAGGCUUGCAGCCCCUCUCCUUCCUGGA… | 1956 nt | 0.5251 |
| lnc-PTPA-1:3 | CUUCCCCACAGCCGCCCCUGUGAUGGAACAUUUGAGGGUACAUCUGCCC… | 767 nt | 0.5593 |
| lnc-PTPA-1:4 | CUUCCCCACAGCCGCCCCUGUGAUGGAACAUUUGAGGGUACAUCUGCCC… | 3809 nt | 0.5322 |
| lnc-PTPA-1:5 | GGAAACGCUGUCAAGAUGUCAAAAAUACGCGGAAAGGGAAAAAAGGAAU… | 966 nt | 0.5093 |
| lnc-PTPA-1:6 | AGGGGACCUCGCCUGCAUCCAUUCGCCUAUCCAUCCUACAGCAGCGACU… | 395 nt | 0.5139 |
Summary
No relevant information is available at the moment.
Forensic Context
A study in humans demonstrated that the lnc-PTPA-1 is a long non-coding RNA significantly negatively correlated with chronological age (ρ = -0.4697), with expression decreasing in peripheral blood from Han Chinese individuals [Chen et al. DOI:10.1016/J.Fsigen.2025.103419].