Basic Information

Symbol
lnc-SLC39A6-1
RNA class
lncRNA
Alias
COSMOC AC023043.1 ENSG00000260552.1 LOC101927809 OTTHUMG00000176168.1 RP11-49I11.1
Location (GRCh38)
18:36174100-36187450
UCSC Genome Browser Search in Marker Scope
Forensic tag(s)
Drug abuse diagnoses
External database
HGNC NCBI Ensembl LNCipedia RNAcentral

Transcripts

ID Sequence Length GC content
lnc-SLC39A6-1:1 CCAGCCUCCCAGUCUCUCGGAAUCCGCAGCCUAGGUGUGGCGCCCCGAC… 609 nt 0.5140
lnc-SLC39A6-1:10 GCCCCUGUCCCGGACAGAGUGGAAUAAGAGCGCCUCCUUCAAUCCCCAC… 1191 nt 0.5995
lnc-SLC39A6-1:11 CUCUCGGAAUCCGCAGCCUAGGUGUGGCGCCCCGACCGGACUUUCACUU… 591 nt 0.5127
lnc-SLC39A6-1:2 CCGACCGGACUUUCACUUCUGGCCAGCCCUUUCCCCACCUGGGCGCGGG… 971 nt 0.4974
lnc-SLC39A6-1:3 CCAGUCUCUCGGAAUCCGCAGCCUAGGUGUGGCGCCCCGACCGGACUUU… 601 nt 0.5108
lnc-SLC39A6-1:4 CUCCAGCCUCCCAGUCUCUCGGAAUCCGCAGCCUAGGUGUGGCGCCCCG… 611 nt 0.5139
lnc-SLC39A6-1:5 CUCCAGCCUCCCAGUCUCUCGGAAUCCGCAGCCUAGGUGUGGCGCCCCG… 4789 nt 0.5508
lnc-SLC39A6-1:6 CUCCAGCCUCCCAGUCUCUCGGAAUCCGCAGCCUAGGUGUGGCGCCCCG… 4270 nt 0.5527
lnc-SLC39A6-1:7 CUCCAGCCUCCCAGUCUCUCGGAAUCCGCAGCCUAGGUGUGGCGCCCCG… 308 nt 0.6136
lnc-SLC39A6-1:8 CUCCAGCCUCCCAGUCUCUCGGAAUCCGCAGCCUAGGUGUGGCGCCCCG… 602 nt 0.5183
Showing 1 to 10 of 11 entries
Summary

No relevant information is available at the moment.

Forensic Context

A study in humans identified the lnc-SLC39A6-1 as a long noncoding RNA that is upregulated 1.37-fold in the postmortem midbrain of chronic cocaine abusers compared to matched controls, with its differential expression validated as part of a larger dataset [Bannon et al. DOI:10.1111/jnc.13255].